Job Description P09980 Confidence 97.96% Date Thu Jan 5 11:02:33 GMT 2012 Rank 73 Aligned Residues 72 % Identity 17% Template c1a1vA_ PDB info PDB header:hydrolase/dna Chain: A: PDB Molecule:protein (ns3 protein); PDBTitle: hepatitis c virus ns3 helicase domain complexed with single2 stranded sdna Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.												.	.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	E	F	V	T	G	P	C	L	V	L	A	G	A	G	S	G	K	T	R	V	I	T	N	K	I	A	H	L	I	R	G	C	G	Y	Q	A	R	H	I	A	A	V	T	F	T	N	K	A	A	R	E	M	K	E	R	V	G	Q	T	L	G	R	K	.	.	.	.	.	.	.	.	.	.	.	E	A	R	G	L
Query Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.										.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.										.	.	.	.
Template Sequence		V	P	Q	S	F	Q	V	A	H	L	H	A	P	T	G	S	G	K	S	T	K	V	.	.	.	P	A	A	Y	A	A	Q	G	Y	.	.	.	.	K	V	L	V	L	N	P	S	V	A	A	T	L	G	F	G	A	Y	M	S	K	A	H	G	V	D	P	N	I	R	T	G	V	R	T	I	T	T	G	S	P	I
Template Known Secondary structure				S	S										T	T	S		T	T	T			.	.	.						T	T	T		.	.	.	.							S																	S								S	S								S
Template Predicted Secondary structure																								.	.	.										.	.	.	.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.				.	.	.	.	.	220	.	.	.					.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	S	T	F	H	T	L	G	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	Y	S	T	Y	G	K	F	L	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		266	.	.	.	270	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions