Job Description P55799 Confidence 99.05% Date Thu Jan 5 12:06:13 GMT 2012 Rank 39 Aligned Residues 172 % Identity 22% Template c3qg5D_ PDB info PDB header:hydrolase Chain: D: PDB Molecule:mre11; PDBTitle: the mre11:rad50 complex forms an atp dependent molecular clamp in dna2 double-strand break repair Resolution 3.40 Å

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		15	.	.	.	.	20	.	.	.	.		.	.																.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.									.	.	.
Predicted Secondary structure												.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.													.	.	.	.	.	.	.	.
Query SS confidence												.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.													.	.	.	.	.	.	.	.
Query Sequence		R	H	I	W	V	V	G	D	I	H	.	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	Q	L	L	Q	S	R	L	H	Q	L	S	F	F	P	K	I	D	L	L	I	S	V	G	D	N	I	D	.	R	G	P	E	S	L	D	V	L	R	L	L	.	.	.	.	.	.	.	.	N	Q	P
Query Conservation												.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.													.	.	.	.	.	.	.	.
Alig confidence												.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.																.													.	.	.	.	.	.	.	.
Template Conservation																																										.
Template Sequence		X	K	I	L	H	T	S	D	W	H	L	G	V	T	S	W	T	S	S	R	P	V	D	R	R	E	E	L	K	K	A	L	D	K	V	V	E	E	A	E	.	K	R	E	V	D	L	I	L	L	T	G	D	L	L	H	S	R	N	N	P	S	V	V	A	L	H	D	L	L	D	Y	L	K	R	X	X	R	T	A
Template Known Secondary structure												B	T					T	T	T	S				T																	.		T	T		S								S	B	S		S	S																			T	T	S
Template Predicted Secondary structure																																										.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		70	.	.	.	.	.	.	.	.	.	80	.																										.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	F	T	S	V	K	G	N	H	E	A	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	E	A	F	E	T	G	D	G	N	M	W	L	A	S	G	G	D	W	F	F	D	L	N	D	S	E	Q	Q	E	A	I	D	L	L	L	K	F	H	H	L	P
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	V	V	V	L	P	G	N	H	D	W	K	G	L	K	L	F	G	N	F	V	T	S	I	S	S	D	I	T	F	V	X	S	F	E	P	V	D	V	E	A	K	R	G	Q	K	V	R	I	L	P	F	P	Y	P	D	E	S	E	A	L	R	K	N	E	G	D	F	R	F	F	L	E	S	R	L	N	K	L	Y
Template Known Secondary structure									S			S	T	T													S	S						S	S	S							T	T														S									T
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	I	I	E	I	T	N	D	N	I	K	Y	A	I	A	H	A	D	Y	P	G	S	E	Y	L	F	G	K	E	I	A	E	S	E	L	L	W	P	V	D	R	V	Q	K	S	L	N	G	E	L	Q	Q	I	N	G	A	D	Y	F	I	F	G	H	M	M	F	D	N	I	Q	T	F	A	N	Q	I	Y	I	D	T
Query Conservation
Alig confidence					.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Conservation					.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Sequence		E	E	A	.	L	K	K	E	D	F	A	I	F	X	G	H	F	T	V	E	G	L	A	G	Y	R	E	I	I	I	N	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	I	P	S	V	V	D	Y	A	A	L	G	H	I	H	S	F	R	E	I	Q	K	Q	P	L	T	I	Y	.	P
Template Known Secondary structure					.		T		S	S								S			T	T	S										G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	S		S	S		S						S		S	S							T	T					.
Template Predicted Secondary structure					.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template SS confidence
		166	.	.		.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.																		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.		.
		205	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		233	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions