Return to main results Retrieve Phyre Job Id

Job DescriptionP13033
Confidence99.82%DateThu Jan 5 11:33:29 GMT 2012
Rank91Aligned Residues277
% Identity15%Templated1jnra2
SCOP infoFAD/NAD(P)-binding domain FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
Resolution1.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20... ......30.... .....40.........50........ .60.........70..
Predicted Secondary structure 






....




..

















..




Query SS confidence 






















. . . .










. .























. .













Query Sequence  MRFDTVIMGGGLAGLLCGLQLQK. . . . HGLRCAIVTRG. . QSALHFSSGSLDLLSHLPDGQPVT. . DIHSGLESLRQQAP
Query Conservation 
 








 


 

  

 .... 
  
 



 .. 

     
               ..              
Alig confidence 






















....










..























..













Template Conservation   
 














  


     
  
 



    

     
                    
          
Template Sequence  VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRSERQNTLEDYVRYVTLDM
Template Known Secondary structure 
S

STTTT


SS
TTT
STTTT
S



SSSSBS



T
Template Predicted Secondary structure 

































Template SS confidence 















































































   21........30.........40.........50.........60.........70.........80.........90.........100
 
   73......80.........90.........100.........110.........120.........130.........140.........150..
Predicted Secondary structure 
















































Query SS confidence 















































































Query Sequence  AHPYSLLEPQRVLDLACQAQALIAESGAQLQGSVELAHQRVTPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQA
Query Conservation                                                                                  
Alig confidence 






























.................................................
Template Conservation                        
   
    .................................................
Template Sequence  MGLAREDLVADYARHVDGTVHLFEKWGLPIW. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT


TT

B
.................................................
Template Predicted Secondary structure 







.................................................
Template SS confidence 















































































   101........110.........120.........130.
 
   153......160.........170.........180.........190.........200.........210.........220.........230..
Predicted Secondary structure 





















































Query SS confidence 















































































Query Sequence  HLAAASLRELGLAVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLW
Query Conservation                                                                          
       
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ................................................................................
Template Predicted Secondary structure  ................................................................................
Template SS confidence 















































































  
 
   233......240.........250.........260.........270 .........280........ .290.........300....
Predicted Secondary structure 














..






......



Query SS confidence 





































. .

















. . . . . .















Query Sequence  RWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQG. . GVWMPGDEVKKVTCKNGV. . . . . . VNEIWTRNHADIPLRP
Query Conservation                                       
..        
         ......               
Alig confidence  ....

































..

















......















Template Conservation  ....                  
                            
                         
  
Template Sequence  . . . . KTPDGKYVREGQWQIMIHGESYKPIIAEAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKA
Template Known Secondary structure  ....B
TTS
B
BSSSS
TT
GGG
S
TT
TTBSSSS

Template Predicted Secondary structure  ....




























Template SS confidence 















































































   132.......140.........150.........160.........170.........180.........190.........200.......
 
   305....310.........320.........330..... ....340.........350.........360.........370.
Predicted Secondary structure 






















.............



























Query SS confidence 






























. . . . . . . . . . . . .



































Query Sequence  RFAVLASGSFFSGGLVAERNGIREPILGLDV. . . . . . . . . . . . . LQTATRGEWYKGDFFAPQPWQQFGVTTDETLRPSQA
Query Conservation 
 

 
 
                       .............                    
 


 

        
Alig confidence 






























.............

































..
Template Conservation    



 

   
                     

       
  
                     
 
     

..
Template Sequence  KAVILATGGATLLFRPRSTGEAAGRTWYAIFDTGSGYYMGLKAGAMLTQAGFWVCGPEDLMPEEYAKLFPLKYNRMTT. .
Template Known Secondary structure  S



B
SSS

S

SGGGG

SS
TT
BST








TTT

TT
SS

TTB
S..
Template Predicted Secondary structure 
















































..
Template SS confidence 















































































   208.210.........220.........230.........240.........250.........260.........270.........280.....
 
   372.......380.........390.........400.........410.........
Predicted Secondary structure 





















Query SS confidence 















































Query Sequence  GQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHAAQQIAQRAGGQQ
Query Conservation     








  

        
 
 
   
  

  

    
  
Alig confidence  ...




















....



















Template Conservation  ...  

 
 



          ....
   
  

  
   
    
Template Sequence  . . . VKGLFAIGDCAGANPHKFSSG. . . . SFTEGRIAAKAAVRFILEQK
Template Known Secondary structure  ...SBT
GGGB
S



....
Template Predicted Secondary structure  ...









....


Template SS confidence 















































   431........440.........450. ........460.........470.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions