Job Description P13033 Confidence 99.82% Date Thu Jan 5 11:33:29 GMT 2012 Rank 91 Aligned Residues 277 % Identity 15% Template d1jnra2 SCOP info FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain Resolution 1.60

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.					.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																									.	.	.	.												.	.																									.	.
Query SS confidence																									.	.	.	.												.	.																									.	.
Query Sequence		M	R	F	D	T	V	I	M	G	G	G	L	A	G	L	L	C	G	L	Q	L	Q	K	.	.	.	.	H	G	L	R	C	A	I	V	T	R	G	.	.	Q	S	A	L	H	F	S	S	G	S	L	D	L	L	S	H	L	P	D	G	Q	P	V	T	.	.	D	I	H	S	G	L	E	S	L	R	Q	Q	A	P
Query Conservation																									.	.	.	.												.	.																									.	.
Alig confidence																									.	.	.	.												.	.																									.	.
Template Conservation
Template Sequence		V	E	T	D	I	L	I	I	G	G	G	F	S	G	C	G	A	A	Y	E	A	A	Y	W	A	K	L	G	G	L	K	V	T	L	V	E	K	A	A	V	E	R	S	G	A	V	A	Q	G	L	S	A	I	N	T	Y	I	D	L	T	G	R	S	E	R	Q	N	T	L	E	D	Y	V	R	Y	V	T	L	D	M
Template Known Secondary structure					S							S															T	T	T	T								S	S		T	T	T		S	T	T	T	T						S					S	S	S	S	B	S																T
Template Predicted Secondary structure
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	P	Y	S	L	L	E	P	Q	R	V	L	D	L	A	C	Q	A	Q	A	L	I	A	E	S	G	A	Q	L	Q	G	S	V	E	L	A	H	Q	R	V	T	P	L	G	T	L	R	S	T	W	L	S	S	P	E	V	P	V	W	P	L	P	A	K	K	I	C	V	V	G	I	S	G	L	M	D	F	Q	A
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	G	L	A	R	E	D	L	V	A	D	Y	A	R	H	V	D	G	T	V	H	L	F	E	K	W	G	L	P	I	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T																								T	T			B		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	A	A	A	S	L	R	E	L	G	L	A	V	E	T	A	E	I	E	L	P	E	L	D	V	L	R	N	N	A	T	E	F	R	A	V	N	I	A	R	F	L	D	N	E	E	N	W	P	L	L	L	D	A	L	I	P	V	A	N	T	C	E	M	I	L	M	P	A	C	F	G	L	A	D	D	K	L	W
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270			.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.							.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																																								.	.																			.	.	.	.	.	.
Query SS confidence																																								.	.																			.	.	.	.	.	.
Query Sequence		R	W	L	N	E	K	L	P	C	S	L	M	L	L	P	T	L	P	P	S	V	L	G	I	R	L	Q	N	Q	L	Q	R	Q	F	V	R	Q	G	.	.	G	V	W	M	P	G	D	E	V	K	K	V	T	C	K	N	G	V	.	.	.	.	.	.	V	N	E	I	W	T	R	N	H	A	D	I	P	L	R	P
Query Conservation																																								.	.																			.	.	.	.	.	.
Alig confidence		.	.	.	.																																			.	.																			.	.	.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	K	T	P	D	G	K	Y	V	R	E	G	Q	W	Q	I	M	I	H	G	E	S	Y	K	P	I	I	A	E	A	A	K	M	A	V	G	E	E	N	I	Y	E	R	V	F	I	F	E	L	L	K	D	N	N	D	P	N	A	V	A	G	A	V	G	F	S	V	R	E	P	K	F	Y	V	F	K	A
Template Known Secondary structure		.	.	.	.	B		T	T	S		B		B	S	S	S	S							T	T															G	G	G				S										T	T		T	T	B									S	S	S	S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.														.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	F	A	V	L	A	S	G	S	F	F	S	G	G	L	V	A	E	R	N	G	I	R	E	P	I	L	G	L	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Q	T	A	T	R	G	E	W	Y	K	G	D	F	F	A	P	Q	P	W	Q	Q	F	G	V	T	T	D	E	T	L	R	P	S	Q	A
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.
Template Conservation																																																																																.	.
Template Sequence		K	A	V	I	L	A	T	G	G	A	T	L	L	F	R	P	R	S	T	G	E	A	A	G	R	T	W	Y	A	I	F	D	T	G	S	G	Y	Y	M	G	L	K	A	G	A	M	L	T	Q	A	G	F	W	V	C	G	P	E	D	L	M	P	E	E	Y	A	K	L	F	P	L	K	Y	N	R	M	T	T	.	.
Template Known Secondary structure		S									B		S	S	S			S			S	G	G	G	G			S	S		T	T		B	S										T														T	T	T							T	T		S	S			T	T	B		S	.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	T	I	E	N	L	F	A	I	G	S	V	L	G	G	F	D	P	I	A	Q	G	C	G	G	G	V	C	A	V	S	A	L	H	A	A	Q	Q	I	A	Q	R	A	G	G	Q	Q
Query Conservation
Alig confidence		.	.	.																						.	.	.	.
Template Conservation		.	.	.																						.	.	.	.
Template Sequence		.	.	.	V	K	G	L	F	A	I	G	D	C	A	G	A	N	P	H	K	F	S	S	G	.	.	.	.	S	F	T	E	G	R	I	A	A	K	A	A	V	R	F	I	L	E	Q	K
Template Known Secondary structure		.	.	.	S	B	T					G	G	G	B		S									.	.	.	.
Template Predicted Secondary structure		.	.	.																						.	.	.	.
Template SS confidence
					431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.					.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions