Job Description P13033 Confidence 99.85% Date Thu Jan 5 11:33:29 GMT 2012 Rank 81 Aligned Residues 303 % Identity 16% Template c3ntaA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide PDBTitle: structure of the shewanella loihica pv-4 nadh-dependent persulfide2 reductase Resolution 2.01 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence		T	V	I	M	G	G	G	L	A	G	L	L	C	G	L	Q	L	Q	K	H	G	.	.	L	R	C	A	I	V	T	R	G	Q	S	A	L	H	F	S	S	G	S	L	D	L	L	S	H	L	P	D	G	Q	P	V	T	D	I	H	S	G	L	E	S	L	R	Q	Q	A	P	A	H	P	Y	S	L	L	E	P	Q
Query Conservation																							.	.
Alig confidence																							.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Template Sequence		I	L	I	I	G	G	V	A	G	G	A	S	A	A	A	R	A	R	R	L	S	E	T	A	E	I	I	X	F	E	R	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	V	S	F	A	N	C	G	L	P	Y	H	I	S	G	E	I	A	Q	R	S	A	L	V	L	Q	T	.	.	.	.
Template Known Secondary structure								S	T	T													S	S								S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	B		G	G	G						T	S	S	S			G	G	G	G	B				.	.	.	.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.																	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.					.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.
Query SS confidence																																																																		.	.	.	.
Query Sequence		R	V	L	D	L	A	C	Q	A	Q	A	L	I	A	E	S	G	A	Q	L	Q	G	S	V	E	L	A	H	Q	R	V	T	P	L	G	T	L	R	S	T	W	L	S	S	P	E	V	P	V	W	P	L	P	A	K	K	I	C	V	V	G	I	S	G	.	.	.	.	L	M	D	F	Q	A	H	L	A	A	A	S
Query Conservation																																																																		.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	P	E	S	F	K	A	R	F	N	V	E	V	R	V	K	H	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	A	I	D	R	A	A	K	L	V	T	V	R	R	L	L	D	G	S	E	Y	Q	E	S	Y	D	T	L	L	L	S	P	G
Template Known Secondary structure		.	.	.	.	.	.	.	.														T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T	T	T							T	T	T									S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
										64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80																						.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	E	L	G	L	A	V	E	T	A	E	I	E	L	P	E	L	D	V	L	R	N	N	A	T	E	F	R	A	V	N	I	A	R	F	L	D	N	E	E	N	W	P	L	L	L	D	A	L	I	P	V	A	N	T	C	E	M	I	L	M	P	A	C	F	G	L	A	D	D	K	L	W	R	W	L	N	E	K
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.
Template Sequence		A	A	P	I	V	P	P	I	P	G	V	D	N	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	H	S	L	R	N	I	P	D	X	D	R	I	L	Q	T	I	Q	X	N	N	V	E	H	A	T	V	V	G	G	G	F	I	G	L	E	X	X	E	S	L	H	H	L	.	.	.
Template Known Secondary structure										T	T			S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T					S	S														T	T		S								S													T	.	.	.
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.																			.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.			.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290																			.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	P	C	S	L	M	L	L	P	T	L	P	P	S	V	L	.	.	G	I	R	L	Q	N	Q	L	Q	R	Q	F	V	R	Q	G	G	V	W	M	P	G	D	E	V	K	K	V	T	C	K	N	G	V	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	I	W	T	R	N	H	A
Query Conservation																		.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	G	I	K	T	T	L	L	E	L	A	D	Q	V	X	T	P	V	D	R	E	X	A	G	F	A	H	Q	A	I	R	D	Q	G	V	D	L	R	L	G	T	A	L	S	E	V	S	Y	Q	V	Q	T	H	V	A	S	D	A	A	G	E	D	T	A	H	Q	H	I	K	G	H	L	S	L	T	L	S	N	G	E
Template Known Secondary structure		.	T								S	S	S	S	S		S	S	S															T	T						S																	T	T	T	T				T	T			T	T								T	T	S
Template Predicted Secondary structure		.
Template SS confidence
			174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	P	L	R	P	R	F	A	V	L	A	S	G	S	F	F	S	G	G	L	V	A	E	R	N	G	I	R	E	P	I	L	G	L	D	V	L	Q	T	A	T	R	G	E	W	Y	K	G	D	F	F	A	P	Q	P	W	Q	Q	F	G	V	T	T	D	E	T	L	R	P	S	Q	A	G	Q	T	I	E	N	L
Query Conservation
Alig confidence			.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Template Conservation			.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Template Sequence		L	.	.	L	E	T	D	L	L	I	X	A	I	G	V	R	P	E	T	Q	L	A	R	D	A	G	L	A	I	G	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	I	K	V	N	A	X	X	Q	T	S	.	.	.	.	.	D	P	A	I
Template Known Secondary structure			.	.				S						S												T	T			B		T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	B				T	T		B		S	.	.	.	.	.	S	T	T
Template Predicted Secondary structure			.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Template SS confidence
		253			.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.																												.	.	.	.	.	.	.	290	.	.	.	.						.	.	.	.
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.					.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure																	.	.	.	.
Query SS confidence																	.	.	.	.
Query Sequence		F	A	I	G	S	V	L	G	G	F	D	P	I	A	Q	.	.	.	.	G	C	G	G	G	V	C	A	V	S	A	L	H	A	A	Q	Q	I	A
Query Conservation																	.	.	.	.
Alig confidence																	.	.	.	.
Template Conservation
Template Sequence		Y	A	V	G	D	A	V	E	E	Q	D	F	V	T	G	Q	A	C	L	V	P	L	A	G	P	A	N	R	Q	G	R	X	A	A	D	N	X	F
Template Known Secondary structure					S	T	T	B				B	T	T	T																								T
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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