Job Description P13033 Confidence 99.81% Date Thu Jan 5 11:33:29 GMT 2012 Rank 94 Aligned Residues 282 % Identity 17% Template c3k30B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:histamine dehydrogenase; PDBTitle: histamine dehydrogenase from nocardiodes simplex Resolution 2.70 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence		T	V	I	M	G	G	G	L	A	G	L	L	C	G	L	Q	L	Q	K	H	G	L	R	C	A	I	V	T	R	G	Q	.	.	S	A	L	H	F	S	S	G	S	L	D	L	L	S	H	L	P	D	G	Q	P	V	T	D	I	H	S	G	L	E	S	L	R	Q	Q	A	P	A	H	P	Y	S	L	L	E	P	Q
Query Conservation																																	.	.
Alig confidence																																	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	L	V	V	G	A	G	P	S	G	L	E	A	A	R	A	L	G	V	R	G	Y	D	V	V	L	A	E	A	G	R	D	L	G	G	R	V	T	Q	E	S	A	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	S
Template Known Secondary structure								S														T								S	S	S	S	S		T							T	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T		G
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.																																		.	.	440
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		R	V	L	D	L	A	C	Q	A	Q	A	L	I	A	E	S	.	G	A	Q	L	Q	G	S	V	E	L	A	H	Q	R	V	T	P	L	G	T	L	R	S	T	W	L	S	S	P	E	V	P	V	W	P	L	P	A	K	K	I	C	V	V	G	I	S	G	L	M	D	F	Q	A	H	L	A	A	A	S	L	R	E
Query Conservation																		.
Alig confidence																		.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	W	G	R	V	K	E	Y	R	E	A	V	L	A	E	L	P	N	V	E	I	Y	R	E	S	P	M	T	G	D	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	F	G	F	E	H	V	I	T	A	T	G	A	T	W
Template Known Secondary structure		G	G	G												T		T	T					S	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.																																	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	L	A	V	E	T	A	E	I	E	L	P	E	L	D	V	L	R	N	N	A	T	E	F	R	A	V	N	I	A	R	F	L	D	N	E	E	N	W	P	L	L	L	D	A	L	I	P	V	A	N	T	C	E	M	I	L	M	P	A	C	F	G	L	A	D	D	K	L	W	R	W	L	N	E	K	L	P	C
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.
Template Sequence		R	T	D	G	V	A	R	F	H	T	T	A	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	E	G	M	Q	V	L	G	P	D	D	L	F	A	G	R	L	P	D	G	K	K	V	V	V	Y	D	D	D	H	Y	Y	L	G	G	V	V	A	E	L	L	A	Q	K	G	.	Y	E	V	S
Template Known Secondary structure			S	S			S	S	S		S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B		T	T	S											T				S	S	S								S		S	S												T	T	.
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.
Template SS confidence
		489	490	.	.	.	.	.	.	.	.	.	500	.	.																.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.		.	550	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	M	L	L	P	T	L	P	P	S	V	L	G	I	R	L	Q	N	Q	L	Q	R	Q	F	V	R	Q	G	G	V	W	M	P	G	D	E	V	K	K	V	T	C	K	N	G	V	V	N	E	I	W	T	R	N	H	A	D	I	P	L	R	P	R	F	A	V	L	A	S	G	S	F	F	S	G	G	L	V	A
Query Conservation
Alig confidence																																											.	.
Template Conservation																																											.	.
Template Sequence		I	V	T	P	G	A	Q	V	S	S	W	T	N	N	T	F	E	V	N	R	I	Q	R	R	L	I	E	N	G	V	A	R	V	T	D	H	A	V	V	A	V	.	.	G	A	G	G	V	T	V	R	D	T	Y	A	S	I	E	R	E	L	E	C	D	A	V	V	M	V	T	A	R	L	P	R	E	E	L	Y	L
Template Known Secondary structure					S	S	S	S	T	T	G	G	G	G	T	T	T												T	T						S							.	.		T	T							T	T	T									S
Template Predicted Secondary structure																																											.	.
Template SS confidence
		553	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.			.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	N	G	I	R	E	P	I	L	G	L	D	V	L	Q	T	A	T	R	G	E	W	Y	K	G	D	F	F	A	P	Q	P	W	Q	Q	F	G	V	T	T	D	E	T	L	R	P	S	Q	A	G	Q	T	I	E	N	L	F	A	I	G	S	V	L	G	G	F	D	P	I	A	Q	G	C	G	G	G	V	C	A
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template Sequence		D	L	V	A	R	R	D	A	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	S	V	R	G	I	G	D	A	W	A	P	G	T	I	A	A	.	.	.	.	.	.	.	A	V
Template Known Secondary structure								T	T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S						G	G	G	T	S							.	.	.	.	.	.	.
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template SS confidence
		631	.	.	.	.	.	.	.	.	640																																												.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.								.	660
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	A	L	H	A	A	Q	Q	I	A	Q	R	A	G	G	Q	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	S	G	R	R	A	A	E	E	F	D	A	V	L	P	S	N	D
Template Known Secondary structure											T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		661	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions