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Job DescriptionP13033
Confidence99.88%DateThu Jan 5 11:33:29 GMT 2012
Rank65Aligned Residues251
% Identity23%Templatec3cp8C_
PDB info PDB header:oxidoreductaseChain: C: PDB Molecule:trna uridine 5-carboxymethylaminomethyl PDBTitle: crystal structure of gida from chlorobium tepidum
Resolution3.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  RFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQPVTDIHSGLESLRQQAPAHPYSLLEP
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Template Sequence  MYDVIVVGAGHAGCEAALAVARGGLHCLLITSDL. SAVARMSCNPAIGGVAKGQITREIDALGGEM. . . . . . . . . . . . . .
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STT


S
G.GGTT

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S
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   1........10.........20.........30.... .....40.........50.........60.....
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
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Query Sequence  QRVLDLACQAQALIAESGAQLQGSVELAHQRVTPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRE
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Template Sequence  . . . . . . . . . . GKAIDATGIQFRMLNRSKGPAMHSPR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   66...70.........80.........90.
 
   162.......170.........180.........190.........200.........210.........220.........230.........240.
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Query Sequence  LGLAVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWRWLNEKLPC
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Query Sequence  SLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFAVLASGSFFSGG. . .
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Template Sequence  . . . . . . . . . AQADKTQYSLYMRRIVEHEPNIDLLQDTVIGVSANSGKFSSVTVRSGRA. . IQAKAAILACGTFLNGLIHI
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T
TT


TTTTS
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TT
BT
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   92.......100.........110.........120.........130.........140 .........150.........160
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  GMDHFPGGRSTAEPPVEGLTESLASLGFSFGRLKTGTPPRIDSRSVDYTIVTEQPGDVDPVPFSFSSTSVANRNLVSCYL
Template Known Secondary structure  TT
SSSTTS

B
STT



GGGS
TTTS


SS


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GGG



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   161........170.........180.........190.........200.........210.........220.........230.........240
 
   319320.........330.........340.........350..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LVAERNGIREPILGLDVLQTATRGEWYKGDFFAP
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Template Sequence  TKTTEKTHDILRTGFDRSPLFTGCPSIEDKISRFPDKSSHHIFLEPEGTDTVEMYVNGFSTSLPEDIQIAGLRSIPGLEE
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TTTTT
TT





S

S
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SSTT

T



S
TTSTT
TT
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   241........250.........260.........270.........280.........290.........300.........310.........320
 
   353......360. ........370 .........380.........390.........400.........410.........
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Query Sequence  QPWQQFGVT. . . . . TDETLRPSQ. AGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHAAQQIAQRAGGQQ
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Template Sequence  AKMIRPGYAIEYDFFHPWQIRSTMETRPVENLFFAGQING. . . . . . . TSGYEEAAAQGLMAGINAVRKILGKE
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GGGB
TTSBBSSSBT
SGGGT.......B

T

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   330.........340.........350.........360......... 370.........380.........390.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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