Job Description P13033 Confidence 99.85% Date Thu Jan 5 11:33:29 GMT 2012 Rank 82 Aligned Residues 302 % Identity 14% Template c2q0lA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase; PDBTitle: helicobacter pylori thioredoxin reductase reduced by sodium dithionite2 in complex with nadp+ Resolution 1.45 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																		.	.
Query SS confidence																																		.	.
Query Sequence		F	D	T	V	I	M	G	G	G	L	A	G	L	L	C	G	L	Q	L	Q	K	H	G	L	R	C	A	I	V	T	R	G	.	.	Q	S	A	L	H	F	S	S	G	S	L	D	L	L	S	H	L	P	D	G	Q	P	V	T	D	I	H	S	G	L	E	S	L	R	Q	Q	A	P	A	H	P	Y	S	L	L	E
Query Conservation																																		.	.
Alig confidence																																		.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	D	C	A	I	I	G	G	G	P	A	G	L	S	A	G	L	Y	A	T	R	G	G	V	K	N	A	V	L	F	E	K	G	M	P	G	G	Q	I	T	G	S	S	E	I	E	N	Y	P	G	V	K	E	V	V	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										S													T	T		S	S						S	S	S	T	T		G	G	G	G		S		B			S	T	T			S		B			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	R	V	L	D	L	A	C	Q	A	Q	A	L	I	A	E	S	G	A	Q	L	Q	G	S	V	E	L	A	H	Q	R	V	T	P	L	G	T	L	R	S	T	W	L	S	S	P	E	V	P	V	W	P	L	P	A	K	K	I	C	V	V	G	I	S	G	L	M	D	F	Q	A	H	L	A	A	A	S	L	R
Query Conservation
Alig confidence		.	.	.	.																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	L	D	F	M	Q	P	W	Q	E	Q	C	F	R	F	G	L	K	H	E	M	T	A	V	Q	R	V	S	K	K	D	S	H	F	V	I	L	A	E	D	G	K	T	F	E	A	K	S	V	I	I	A	T	G	G	S	P	K	R	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.													T	T	S						S									T	T							T	T	S																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
						59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	G	L	A	V	E	T	A	E	I	E	L	P	E	L	D	V	L	R	N	N	A	T	E	F	R	A	V	N	I	A	R	F	L	D	N	E	E	N	W	P	L	L	L	D	A	L	I	P	V	A	N	T	C	E	M	I	L	M	P	A	C	F	G	L	A	D	D	K	L	W	R	W	L	N	E	K	L	P
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	K	G	E	S	E	Y	W	G	K	G	V	S	T	C	A	T	C	D	G	F	F	Y	K	N	K	E	V	A	V	L	G	G	G	D	T	A	V	E	E	A	I	Y	L	A	N	I	.	.	.	.	C
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		B	T					B	T	T	T			S						G	G	G	G	T	T	S								S												T	T	.	.	.	.	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.
Template SS confidence
																														119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.					.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.				.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.
Query SS confidence																																																								.	.	.
Query Sequence		C	S	L	M	L	L	P	T	L	P	P	S	V	L	G	I	R	L	Q	N	Q	L	Q	R	Q	F	V	R	Q	G	G	V	W	M	P	G	D	E	V	K	K	V	T	C	K	N	G	V	V	N	E	I	W	T	.	.	.	R	N	H	A	D	I	P	L	R	P	R	F	A	V	L	A	S	G	S	F	F	S	G
Query Conservation																																																								.	.	.
Alig confidence																	.	.	.																																					.	.	.
Template Conservation																	.	.	.
Template Sequence		K	K	V	Y	L	I	H	R	R	D	G	F	R	C	A	.	.	.	P	I	T	L	E	H	A	K	N	N	D	K	I	E	F	L	T	P	Y	V	V	E	E	I	K	G	D	A	S	G	V	S	S	L	S	I	K	N	T	A	T	N	E	K	R	E	L	V	V	P	G	F	F	I	F	V	G	Y	D	V	N	N
Template Known Secondary structure		S							S	S	S	S			S		.	.	.									T		T	T					T	T										T	T										T	T	T									S						S
Template Predicted Secondary structure																	.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.				.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	V	A	E	R	N	G	I	R	E	P	I	L	G	L	D	V	L	Q	T	A	T	R	G	E	W	Y	K	G	D	F	F	A	P	Q	P	W	Q	Q	F	G	V	T	T	D	E	T	L	R	P	S	Q	A	G	Q	T	I	E	N	L	F	A	I	G	S	V	L	G	G	F	D	P	I	A	Q	G	C	G	G
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.														.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.														.	.	.	.	.
Template Sequence		A	V	L	K	Q	E	D	N	S	M	L	C	K	C	D	E	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	I	V	V	D	F	S	M	K	T	N	.	.	.	.	.	V	Q	G	L	F	A	A	G	D	I	R	I	F	.	.	.	.	.	A	P	K	Q	V
Template Known Secondary structure		G	G	G	B		T	T	S		B	S	S		B		T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		B				T	T		B		S	.	.	.	.	.	S	T	T					S	T	T	B	T	T	.	.	.	.	.
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.														.	.	.	.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260																								.	.	.	.	.	.	.	.	.	270	.	.						.	.	.	.	.	.	.	280	.	.	.	.	.						.	.	.	.	290
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	C	A	V	S	A	L	H	A	A	Q	Q	I	A	Q	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	C	A	A	S	D	G	A	T	A	A	L	S	V	I	S	Y	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions