Return to main results Retrieve Phyre Job Id

Job DescriptionP13033
Confidence99.97%DateThu Jan 5 11:33:29 GMT 2012
Rank5Aligned Residues310
% Identity18%Templatec2bs3A_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:quinol-fumarate reductase flavoprotein subunit a; PDBTitle: glu c180 -> gln variant quinol:fumarate reductase from2 wolinella succinogenes
Resolution2.19 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1. .......10.........20.........30..... ....40.........50.........60.........70....
Predicted Secondary structure 

...










...























Query SS confidence 

. . .
































. . .






































Query Sequence  MR. . . FDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQ. . . SALHFSSGSLDLLSHLPDGQPVTDIHSGLESLRQQAPAH
Query Conservation 
 ...








 


 

  

  
  
 



  ...

     
                               
Alig confidence 

...
































...

































.



Template Conservation 
     







 


 


 


 
 

 



    

 
  
 


 
          

 
    
   . 
  
Template Sequence  MKVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNEDLHFMDTVK. GSDW
Template Known Secondary structure 


S

STTT


SS
GGGSGGGG

S





SGGGTT

.TTT
Template Predicted Secondary structure 

































.


Template SS confidence 















































































   1........10.........20.........30.........40.........50.........60.........70..... ....
 
   75....80.........90.........100.........110.........120.........130.........140.........150....
Predicted Secondary structure 














































Query SS confidence 















































































Query Sequence  PYSLLEPQRVLDLACQAQALIAESGAQLQGSVELAHQRVTPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHL
Query Conservation                                                                                  
Alig confidence 




























































...................
Template Conservation 
 
  

      
   
  
   

 
     
                           ...................
Template Sequence  GCDQKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTTITEEDFRHGLIHSRD. . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
S
TT



B

S


SS



GGGTTSB

B
...................
Template Predicted Secondary structure 








































...................
Template SS confidence 















































































   80.........90.........100.........110.........120.........130.........140
 
   155....160.........170.........180.........190.........200.........210.........220.........230....
Predicted Secondary structure 





















































Query SS confidence 















































































Query Sequence  AAASLRELGLAVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWRW
Query Conservation                                                                        
         
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ................................................................................
Template Predicted Secondary structure  ................................................................................
Template SS confidence 















































































  
 
   235....240.........250.........260.........270.........280.........290.... .....300.........310.
Predicted Secondary structure 





















...





Query SS confidence 



























































. . .
















Query Sequence  LNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWT. . . RNHADIPLRPRFAVLAS
Query Conservation                                     
        
               ...         

 

 
 
Alig confidence  ....























































...
















Template Conservation  .... 

    
        
      
   
   

 
        
    
 
 

       
    
 







Template Sequence  . . . . FGGTKKWRTCYTADATGHTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIAT
Template Known Secondary structure  ....
TT
SS


STT
T

STTTTT


S

Template Predicted Secondary structure  ....






























Template SS confidence 















































































   141........150.........160.........170.........180.........190.........200.........210......
 
   312.......320 .........330......
Predicted Secondary structure 





....................















...................................
Query SS confidence 








. . . . . . . . . . . . . . . . . . . .















. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  GSFFSGGLV. . . . . . . . . . . . . . . . . . . . AERNGIREPILGLDVL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation 
        ....................                ...................................
Alig confidence 








....................















...................................
Template Conservation 

              



  

 


 
 
  

 

  

       
      
 
  


  
 

         
Template Sequence  GGYGRIYKNTTNAVVCEGTGTAIALETGIAQLGNMEAVQFHPTPLFPSGILLTEGCRGDGGILRDVDGHRFMPDYEPEKK
Template Known Secondary structure 


GGGSSSBSS
TT
S
TTSSS

TT
S
BBTTT

B

TT

TTS
B

TTTG
Template Predicted Secondary structure 













































Template SS confidence 















































































   217..220.........230.........240.........250.........260.........270.........280.........290......
 
   337..340.........350.........360.
Predicted Secondary structure  .......................................................

















Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
























Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . QTATRGEWYKGDFFAPQPWQQFGVT
Query Conservation  .......................................................                   
 


 
Alig confidence  .......................................................
























Template Conservation   

 

     
  
   
 
        
 

      
 
               
 
     
 
 
   

 


 
Template Sequence  ELASRDVVSRRMIEHIRKGKGVQSPYGQHLWLDISILGRKHIETNLRDVQEICEYFAGIDPAEKWAPVLPMQHYSMGGIR
Template Known Secondary structure  GGS
TTTSB

TT

B
GGG

TS
S
TTTS




Template Predicted Secondary structure 




























Template SS confidence 















































































   297..300.........310.........320.........330.........340.........350.........360.........370......
 
   362.......370.........380..... ....390...... ...400.........410.........
Predicted Secondary structure 



















.






..



Query SS confidence 























.










. .






















Query Sequence  TDETLRPSQAGQTIENLFAIGSVL. GGFDPIAQGCG. . GGVCAVSALHAAQQIAQRAGGQQ
Query Conservation 

           








  .

        
.. 
 
   
  

  

    
  
Alig confidence 







.....










.










..






















Template Conservation 

    
 .....








 
    


 



 

  
 
 
  

  

       
Template Sequence  TDYRGEAK. . . . . LKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEHCANTQ
Template Known Secondary structure 

TTSB
S.....SBT
GGG

SSTTS

TTT

Template Predicted Secondary structure 




.....



















Template SS confidence 




























































   377..380.... .....390.........400.........410.........420.........430..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions