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Job DescriptionP13033
Confidence99.95%DateThu Jan 5 11:33:29 GMT 2012
Rank33Aligned Residues334
% Identity13%Templatec1v59B_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: crystal structure of yeast lipoamide dehydrogenase2 complexed with nad+
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  MR. . FDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQ. . SALHFSSGSLDLLSHLPDGQPVTDIHSGLESLRQQAPAHPY
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Template Sequence  INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIK
Template Known Secondary structure 

STT

SSSSSSSSSGGGT


SS


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   2.......10.........20.........30.........40.........50.........60.........70.........80.
 
   77 ..80.........90.........100.........110.........120.........130.........140.........150.
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Query Sequence  S. . . . . LLEPQRVLDLACQAQALIAESGAQLQGSVELAHQRVTPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQ
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Template Conservation                                                                          
       
Template Sequence  INVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFP
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TT
SSSSS

SS
TT

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T
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   82.......90.........100.........110.........120.........130.........140.........150.........160.
 
   152.......160.........170.........180.........190.........200.........210.........220.........230.
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Query Sequence  AHLAAASLRELGLAVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKL
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Template Conservation   ........................................                                       
Template Sequence  G. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . IEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSV
Template Known Secondary structure  T........................................


BTTT
TT
SS

S

S
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   162 .......170.........180.........190.........200.
 
   232.......240.........250.........260.........270.........280.........290.... .....300.......
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Query Sequence  WRWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWT. . . . RNHADIPLRPRFA
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Template Sequence  YSRL. . GSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVL
Template Known Secondary structure  T..T

SSSSSSSSS
TT
TTTTTTTTTTS
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   202... ....210.........220.........230.........240.........250.........260.........270.........
 
   308.310.........320.........330.........340.........350.........360.........370.........380.......
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Query Sequence  VLASGSFFSGGLVAERNGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDETLRPSQAGQTIENLFAIGSVLGG
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Template Sequence  LVAVGRRPYIAGLGAEKIGLEVDKR. . . . . . . . . . . . . . . . . . . . . . . . . GRLVIDDQFNSK. . . . . FPHIKVVGDVTFG
Template Known Secondary structure 
S


TTS
T

B
TT.........................S
B


TTSB
S.....STT
GGGSSS
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   280.........290.........300.... .....310...... ...320.........
 
   388.390.........400.........410..
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Query Sequence  FDPIAQGCGGGVCAVSALHAAQQIA
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Template Conservation        ......
   
  

  
 
Template Sequence  PMLAHK. . . . . . AEEEGIAAVEMLK
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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