Return to main results Retrieve Phyre Job Id

Job DescriptionP13033
Confidence99.66%DateThu Jan 5 11:33:29 GMT 2012
Rank124Aligned Residues359
% Identity15%Templatec1s3bB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:amine oxidase [flavin-containing] b; PDBTitle: crystal structure of maob in complex with n-methyl-n-2 propargyl-1(r)-aminoindan
Resolution1.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.... .....40.........50.........60.........70.........
Predicted Secondary structure 










..





























Query SS confidence 
































. .












































Query Sequence  RFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRG. . QSALHFSSGSLDLLSHLPDGQPVTDIHSGLESLRQQAPAHPYSLL
Query Conservation   








 


 

  

  
  
 



 .. 

     
                                    
Alig confidence 
































..
























....................
Template Conservation    














  
   
  
 


     


  
     
   
 
      ....................
Template Sequence  KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGP. . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  B
S

BTT


SSSSSBTT

TTTSS


T....................
Template Predicted Secondary structure 






















....................
Template SS confidence 















































































   4.....10.........20.........30.........40.........50.........60...
 
   80.........90.........100.........110.........120.........130.........140.........150.........
Predicted Secondary structure 












































Query SS confidence 















































































Query Sequence  EPQRVLDLACQAQALIAESGAQLQGSVELAHQRVTPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASL
Query Conservation                                                                                  
Alig confidence  .......































.....................



















Template Conservation  .......       
   


                
 .....................                    
Template Sequence  . . . . . . . TQNRILRLAKELGLETYKVNEVERLIHHVKGK. . . . . . . . . . . . . . . . . . . . . SYPFRGPFPPVWNPITYLDH
Template Known Secondary structure  .......T
TT




SSTT.....................
SSS



S
Template Predicted Secondary structure  .......















.....................





Template SS confidence 















































































   64.....70.........80.........90..... ....100.........110.....
 
   160.........170.........180.........190.........200.........210.........220.........230.........
Predicted Secondary structure 




















































Query SS confidence 















































































Query Sequence  RELGLAVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWRWLNEKL
Query Conservation                                                                   
              
Alig confidence 















































































Template Conservation                                      
                                           
Template Sequence  NNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGT
Template Known Secondary structure  TTS
TT
GGGSTTTSB
SSSS
TTTSBTTT
Template Predicted Secondary structure 





















Template SS confidence 















































































   116...120.........130.........140.........150.........160.........170.........180.........190.....
 
   240.........250.........260.........270.........280.........290.........300.........310.........
Predicted Secondary structure 































Query SS confidence 















































































Query Sequence  PCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFAVLASGSFFSGGL
Query Conservation                                
        
                        

 

 
 
       
Alig confidence 


























































...

















Template Conservation                       
                 
           
    
  ...   
 

 
 
      
Template Sequence  TRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRENVLVETLNHEM. . . YEAKYVISAIPPTLGMKI
Template Known Secondary structure 
STTSTTSTT
TGGGSS


SSSSTTS
...S
S
GGGGGGS
Template Predicted Secondary structure 


























...







Template SS confidence 















































































   196...200.........210.........220.........230.........240.........250.... .....260.........270..
 
   320.........330......
Predicted Secondary structure 















...............................................................
Query SS confidence 
















. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  VAERNGIREPILGLDVL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation                   ...............................................................
Alig confidence 
















...............................................................
Template Conservation       

      
          
                                                       
Template Sequence  HFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKL
Template Known Secondary structure  S


TTS

B


SS
GGGGGT
SSS
S
S


TTS
S
T
Template Predicted Secondary structure 










































Template SS confidence 















































































   273......280.........290.........300.........310.........320.........330.........340.........350..
 
   337..340.........350......... 360.........370 .........380..... ...
Predicted Secondary structure  ......................

















....







.











.


Query SS confidence  . . . . . . . . . . . . . . . . . . . . . .






















. . . .










.














.


Query Sequence  . . . . . . . . . . . . . . . . . . . . . . QTATRGEWYKGDFFAPQPWQQFG. . . . VTTDETLRPSQ. AGQTIENLFAIGSVL. GGF
Query Conservation  ......................                   
 

....
 

       .    








  .

 
Alig confidence  ......................






















....










.














.


Template Conservation        
        
                   
   
   
                    
   
  

  
    
Template Sequence  ARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHW
Template Known Secondary structure  TTS
T
GGGG

SGGG
TTT
SSS
B


TTGGGTT

BTT
SGGG
SSS
Template Predicted Secondary structure 






































Template SS confidence 















































































   353......360.........370.........380.........390.........400.........410.........420.........430..
 
   389390.........400.........410......
Predicted Secondary structure 




Query SS confidence 



























Query Sequence  DPIAQGCGGGVCAVSALHAAQQIAQRAG
Query Conservation         
 
 
   
  

  

    
Alig confidence 





.....
















Template Conservation   
 


.....
  

  

  

  

Template Sequence  SGYMEG. . . . . AVEAGERAAREILHAMG
Template Known Secondary structure  TTS.....TT
Template Predicted Secondary structure 


.....
Template SS confidence 



























   433..... .440.........450.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions