Phyre 2 alignment of P13033 with c1nhqA

Job Description P13033
Confidence 99.85% Date Thu Jan 5 11:33:29 GMT 2012

Rank 79 Aligned Residues 313

% Identity 13% Template c1nhqA_

PDB info PDB header:oxidoreductase (h2o2(a)) Chain: A: PDB Molecule:nadh peroxidase; PDBTitle: crystallographic analyses of nadh peroxidase cys42ala and cys42ser2 mutants: active site structure, mechanistic implications, and an3 unusual environment of arg303

Resolution 2.00 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.			.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																									.	.												.	.
Query SS confidence																									.	.												.	.
Query Sequence	M	R	F	D	T	V	I	M	G	G	G	L	A	G	L	L	C	G	L	Q	L	Q	K	H	.	.	G	L	R	C	A	I	V	T	R	G	Q	.	.	S	A	L	H	F	S	S	G	S	L	D	L	L	S	H	L	P	D	G	Q	P	V	T	D	I	H	S	G	L	E	S	L	R	Q	Q	A	P	A	H	P	Y
Query Conservation																									.	.												.	.
Alig confidence			.	.																					.	.												.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	M	K	.	.	V	I	V	L	G	S	S	H	G	G	Y	E	A	V	E	E	L	L	N	L	H	P	D	A	E	I	Q	W	Y	E	K	G	D	F	I	S	F	L	S	S	G	M	Q	L	Y	L	E	G	K	V	K	D	V	N	S	V	R	Y	M	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			.	.						S	S															T	T	S							S	S	S	S	S	S	B		G	G	G						T	T	S	S			G	G	G	S	B	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure			.	.																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	1	.			.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.

	77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	L	L	E	P	Q	R	V	L	D	L	A	C	Q	A	Q	A	L	I	A	E	S	G	A	Q	L	Q	G	S	V	E	L	A	H	Q	R	V	T	P	L	G	T	L	R	S	T	W	L	S	S	P	E	V	P	V	W	P	L	P	A	K	K	I	C	V	V	G	I	S	G	L	M	D	F	Q	A	H	L	A	A
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	M	E	S	R	G	V	N	V	F	S	N	T	E	I	T	A	I	Q	P	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	H	Q	V	T	V	K
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T						T								T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																	64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.																																				.	.	.	.	90	.	.

	157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	S	L	R	E	L	G	L	A	V	E	T	A	E	I	E	L	P	E	L	D	V	L	R	N	N	A	T	E	F	R	A	V	N	I	A	R	F	L	D	N	E	E	N	W	P	L	L	L	D	A	L	I	P	V	A	N	T	C	E	M	I	L	M	P	A	C	F	G	L	A	D	D	K	L	W	R	W	L	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence	D	L	V	S	G	E	E	R	V	E	N	Y	D	K	L	I	I	S	P	G	A	V	P	F	E	L	D	I	P	G	K	D	L	D	N	I	Y	L	M	R	G	R	Q	W	A	I	K	L	K	Q	K	T	V	D	P	E	V	N	N	V	V	V	I	G	S	G	Y	I	G	I	E	A	A	E	A	F	A	K	A	G
Template Known Secondary structure		T	T	T									S															S	T	T	T	T		B	T					S													T		T	T										S													T	T
Template Predicted Secondary structure
Template SS confidence
	93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.

	237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	K	L	P	C	S	L	M	L	L	P	T	L	P	P	S	V	L	G	I	R	L	Q	N	Q	L	Q	R	Q	F	V	R	Q	G	G	V	W	M	P	G	D	E	V	K	K	V	T	C	K	N	G	V	V	N	E	I	W	T	R	N	H	A	D	I	P	L	R	P	R	F	A	V	L	A	S	G	S	F	F	S
Query Conservation
Alig confidence	.																																															.															.	.	.
Template Conservation	.																																															.															.	.	.
Template Sequence	.	K	K	V	T	V	I	D	I	L	D	R	P	L	G	V	Y	L	D	K	E	F	T	D	V	L	T	E	E	M	E	A	N	N	I	T	I	A	T	G	E	T	V	E	R	Y	E	.	G	D	G	R	V	Q	K	V	V	T	D	K	N	A	.	.	.	Y	D	A	D	L	V	V	V	A	V	G	V	R	P	N
Template Known Secondary structure	.								S	S	S	S	T	T	T	T	T																T	T						S								.		S	S	B							S	S			.	.	.				S						S					S
Template Predicted Secondary structure	.																																															.															.	.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.				.	.	.	.	.	.	.	240	.	.	.	.	.	.	.

	317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	G	L	V	A	E	R	N	G	I	R	E	P	I	L	G	L	D	V	L	Q	T	A	T	R	G	E	W	Y	K	G	D	F	F	A	P	Q	P	W	Q	Q	F	G	V	T	T	D	E	T	L	R	P	S	Q	A	G	Q	T	I	E	N	L	F	A	I	G	S	V	L	G	G	F	D	P	I	A	Q	G	C	G
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Template Sequence	T	A	W	L	K	G	T	L	E	L	H	P	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	I	K	T	D	E	Y	M	R	T	S	.	.	.	.	.	E	P	D	V	F	A	V	G	D	A	T	L	I	K	Y	N	P	A	D	T	E	V
Template Known Secondary structure		G	G	G	T	T	T	S		B		T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		B				T	T		B		S	.	.	.	.	.	S	T	T					G	G	G	B					G	G	G	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Template SS confidence
	248	.	250	.	.	.	.	.	.	.	.	.	260																													.	.	.	.	.	.	.	.	.	270	.	.						.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

	397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	G	V	C	A	V	S	A	L	H	A	A	Q	Q	I	A	Q	R	A	G	G	Q	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence	N	I	A	L	A	T	N	A	R	K	Q	G	R	F	A	V	K	N	L	E	E	P	V
Template Known Secondary structure																		T	S	S	S
Template Predicted Secondary structure
Template SS confidence
	295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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