Return to main results Retrieve Phyre Job Id

Job DescriptionP13033
Confidence99.97%DateThu Jan 5 11:33:29 GMT 2012
Rank7Aligned Residues285
% Identity21%Templatec1kf6A_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:fumarate reductase flavoprotein; PDBTitle: e. coli quinol-fumarate reductase with bound inhibitor hqno
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20..... ....30..... ....40.........50.........60.........70.....
Predicted Secondary structure 








..



...
























Query SS confidence 
























. .









. . .







































Query Sequence  MRFDTVIMGGGLAGLLCGLQLQKHG. . LRCAIVTRGQ. . . SALHFSSGSLDLLSHLPDGQPVTDIHSGLESLRQQAPAHP
Query Conservation 
 








 


 

  

  
..  
 



  ...

     
                                
Alig confidence 
























..









...
















.....

















Template Conservation   
 





 
 


 

  
   
    
 



    

 
  
 

        .....

 
    
         
Template Sequence  FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDH. . . . . DSFEYHFHDTVAGGDWLC
Template Known Secondary structure 
S

S
TT

SS
GGGSGGGG

S



STT.....

TTT
S
Template Predicted Secondary structure 


























.....






Template SS confidence 















































































   3......10.........20.........30.........40.........50......... 60.........70.......
 
   76...80.........90.........100.........110.........120.........130.........140.........150.....
Predicted Secondary structure 













































Query SS confidence 















































































Query Sequence  YSLLEPQRVLDLACQAQALIAESGAQLQGSVELAHQRVTPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLA
Query Conservation                                                                                  
Alig confidence 




.


















































.......................
Template Conservation 
  

.          
  
   

 
     
             
        
 .......................
Template Sequence  EQDVV. DYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGF. . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
.TT



B
TTSSB

B

TT
SS


STT
.......................
Template Predicted Secondary structure 
.

























.......................
Template SS confidence 















































































   78.80.. .......90.........100.........110.........120.........130...
 
   156...160.........170.........180.........190.........200.........210.........220.........230.....
Predicted Secondary structure 





















































Query SS confidence 















































































Query Sequence  AASLRELGLAVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWRWL
Query Conservation                                                                       
          
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ................................................................................
Template Predicted Secondary structure  ................................................................................
Template SS confidence 















































































  
 
   236...240.........250.........260.........270.........280.........290.... .....300.........310..
Predicted Secondary structure 





















...






Query SS confidence 


























































. . .

















Query Sequence  NEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWT. . . RNHADIPLRPRFAVLASG
Query Conservation                                    
        
               ...         

 

 
 
Alig confidence  ....................






































...

















Template Conservation  ....................     
        

 
        
    
 
 
               
 






Template Sequence  . . . . . . . . . . . . . . . . . . . . HMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATG
Template Known Secondary structure  ....................TT
TTTTTTTTT
S



Template Predicted Secondary structure  ....................



















Template SS confidence 















































































   134.....140.........150.........160.........170.........180.........190...
 
   313.....
Predicted Secondary structure 




..........................................................................
Query SS confidence 





. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  SFFSGG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation        ..........................................................................
Alig confidence 





..........................................................................
Template Conservation 
              



   
  


 
  

     
                 
  


  
 

           
Template Sequence  GAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETP
Template Known Secondary structure 

GGGSSSBSS
TT
S
TTT

STT

TTT

B

TTT

TT


GGGGTTT
S


Template Predicted Secondary structure 















































Template SS confidence 















































































   194.....200.........210.........220.........230.........240.........250.........260.........270...
 
   319320.........330....... ..340.........350..
Predicted Secondary structure  ......................................
















........














Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .


















. . . . . . . .














Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LVAERNGIREPILGLDVLQ. . . . . . . . TATRGEWYKGDFFAP
Query Conservation  ......................................                   ........               
Alig confidence  ......................................


















........














Template Conservation                
    
   
                 
        
               
 
     
 
 
 
Template Sequence  LGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPT
Template Known Secondary structure  SS


TTSGGGS
T
SB

TT

B
GGG




TTTS
Template Predicted Secondary structure 
































Template SS confidence 















































































   274.....280.........290.........300.........310.........320.........330.........340.........350...
 
   353......360.........370.........380...... ...390......... 400.........410.........
Predicted Secondary structure 






















.





..



Query SS confidence 

































.












. .



















Query Sequence  QPWQQFGVTTDETLRPSQAGQTIENLFAIGSVLG. GFDPIAQGCGGGV. . CAVSALHAAQQIAQRAGGQQ
Query Conservation     
 


 

           








  
.
        
 
 ..
   
  

  

    
  
Alig confidence 
















.....











.












..



















Template Conservation     
 


 

    
 .....








 

 
  

 



 

  
 
 
  

  

       
Template Sequence  AHYTMGGIETDQNCETR. . . . . IKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAG
Template Known Secondary structure 



TTSB
S.....SBT
GGG
SSSTTS

TTS

Template Predicted Secondary structure 






.....




















Template SS confidence 





































































   354.....360.........370 .........380.........390.........400.........410........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions