Phyre 2 alignment of P13033 with c1gv4A

Job Description P13033
Confidence 99.92% Date Thu Jan 5 11:33:29 GMT 2012

Rank 44 Aligned Residues 332

% Identity 14% Template c1gv4A_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:programed cell death protein 8; PDBTitle: murine apoptosis-inducing factor (aif)

Resolution 2.0 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.			.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence	R	F	D	T	V	I	M	G	G	G	L	A	G	L	L	C	G	L	Q	L	Q	K	H	.	.	G	L	R	C	A	I	V	T	R	G	Q	S	A	L	H	F	S	S	G	S	L	D	L	L	S	H	L	P	D	G	Q	P	V	T	D	I	H	S	G	L	E	S	L	R	Q	Q	A	P	A	H	P	Y	S	L	L
Query Conservation																								.	.
Alig confidence																								.	.												.	.																																	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.																																	.	.	.	.	.	.	.	.	.	.
Template Sequence	H	V	P	F	L	L	I	G	G	G	T	A	A	F	A	A	A	R	S	I	R	A	R	D	P	G	A	R	V	L	I	V	S	E	D	P	.	.	E	L	P	Y	M	R	P	P	L	S	K	E	L	W	F	S	D	D	P	N	V	T	K	T	L	Q	F	R	Q	W	N	G	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								S		S														S	T	T								S	S	S	.	.	S			B		S	G	G	G	G	T	G	G	G	S				T	T										T	T	S	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																					.	.																																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.

	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	P	Q	R	V	L	D	L	A	C	Q	A	Q	A	L	I	A	E	S	G	A	Q	L	Q	G	S	V	E	L	A	H	Q	R	V	T	P	L	G	T	L	R	S	T	W	L	S	S	P	E	V	P	V	W	P	L	P	A	K	K	I	C	V	V	G	I	S	G	L	M	D	F	Q	A	H	L	A	A	A	S	L
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	E	R	S	I	Y	F	Q	P	P	S	F	Y	V	S	A	Q	D	L	P	N	I	E	N	G	G	V	A	V	L	T	G	K	K	V	V	H	L	D	V	R	G	N	M	V	K	L	N	D	G	S	Q	I	T	F	E	K	C	L	I	A	T	G	G
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	B	S	S		G	G	G		B		G	G	G	G	G	G	S	T	T								S								T	T	T	T					T	T	S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																	198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	E	L	G	L	A	V	E	T	A	E	I	E	L	P	E	L	D	V	L	R	N	N	A	T	E	F	R	A	V	N	I	A	R	F	L	D	N	E	E	N	W	P	L	L	L	D	A	L	I	P	V	A	N	T	C	E	M	I	L	M	P	A	C	F	G	L	A	D	D	K	L	W	R	W	L	N	E	K	L
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	T	P	R	S	L	S	A	I	D	R	A	G	A	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	S	R	T	T	L	F	R	K	I	G	D	F	R	A	L	E	K	I	S	R	E	V	K	S	I	T	V	I	G	G	G	F	L	G	S	E	L	A	C	A	L	G	R	K	S	Q	A	S
Template Known Secondary structure										T	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T						S												T	T		S								S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	262	.	.	.	.	.	.	.	270	.	.	.	.	.	.																	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.

	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.				.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																.	.	.
Query SS confidence																.	.	.
Query Sequence	P	C	S	L	M	L	L	P	T	L	P	P	S	V	L	.	.	.	G	I	R	L	Q	N	Q	L	Q	R	Q	F	V	R	Q	G	G	V	W	M	P	G	D	E	V	K	K	V	T	C	K	N	G	V	V	N	E	I	W	T	R	N	H	A	D	I	P	L	R	P	R	F	A	V	L	A	S	G	S	F	F	S
Query Conservation																.	.	.
Alig confidence																.	.	.																																													.	.	.
Template Conservation																																																															.	.	.
Template Sequence	G	I	E	V	I	Q	L	F	P	E	K	G	N	M	G	K	I	L	P	Q	Y	L	S	N	W	T	M	E	K	V	K	R	E	G	V	K	V	M	P	N	A	I	V	Q	S	V	G	V	S	G	G	R	L	L	I	K	L	K	D	G	R	K	.	.	.	V	E	T	D	H	I	V	T	A	V	G	L	E	P	N
Template Known Secondary structure									S	S	S	S	T	T	T	T	T	S														T	T	T						S										T	T							T	T	S			.	.	.				S
Template Predicted Secondary structure																																																															.	.	.
Template SS confidence
	326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.				.	.	390	.	.	.	.	.	.	.	.	.	400	.	.

	317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	G	L	V	A	E	R	N	G	I	R	E	P	I	L	G	L	D	V	L	Q	T	A	T	R	G	E	W	Y	K	G	D	F	F	A	P	Q	P	W	Q	Q	F	G	V	T	T	D	E	T	L	R	P	S	Q	A	G	Q	T	I	E	N	L	F	A	I	G	S	V	L	G	G	F	D	P	I	A	Q	G	C	G
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Template Sequence	V	E	L	A	K	T	G	G	L	E	I	D	S	D	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	F	R	V	N	A	E	L	Q	A	.	.	.	.	.	.	R	S	N	I	W	V	A	G	D	A	A	C	F	Y	D	I	K	L	G	R	R	R
Template Known Secondary structure		T					T	T			B		T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S					T	T	S			.	.	.	.	.	.		T	T					G	G	G						T	T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Template SS confidence
	403	.	.	.	.	.	.	410	.	.	.	.	.	.	.																											.	.	420	.	.	.	.	.	.	.	.							.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450

	397	.	.				400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure				.	.	.
Query SS confidence				.	.	.
Query Sequence	G	G	V	.	.	.	C	A	V	S	A	L	H	A	A	Q	Q	I	A
Query Conservation				.	.	.
Alig confidence				.	.	.
Template Conservation
Template Sequence	V	E	H	H	D	H	A	V	V	S	G	R	L	A	G	E	N	M	T
Template Known Secondary structure																			T
Template Predicted Secondary structure
Template SS confidence
	451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions