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Job DescriptionP13033
Confidence99.48%DateThu Jan 5 11:33:29 GMT 2012
Rank145Aligned Residues286
% Identity12%Templatec1gndA_
PDB info PDB header:gtpase activationChain: A: PDB Molecule:guanine nucleotide dissociation inhibitor; PDBTitle: guanine nucleotide dissociation inhibitor, alpha-isoform
Resolution1.81 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1. .......10.........20.........30..... ....40.........50.........60.........70......
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Query Sequence  MR. . FDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQ. . SALHFSSGSLDLLSHLPDGQPVTDIHSGLESLRQQAPAHPY
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Template Sequence  MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI. . . . . . . . . . . . . . . TPLEELYKRFQLLEGPPET
Template Known Secondary structure 

SB
S

STT


SSSSS
TTS
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STT

S


GG
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   1........10.........20.........30.........40...... ...50.........60.....
 
   77..80.........90.........100.........110.........120.........130.........140.........150......
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Query Sequence  SLLEPQRVLDLACQAQALIAESGAQLQGSVELAHQRVTPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAA
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Template Sequence  MGRGR. . . . . . . . . . . DWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVE. GSFVYKGGKIYKVPSTETEALASNLMG
Template Known Secondary structure  G

GG...........G

SS

BTTSTGGGS



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   66...70 .........80.........90.........100...... ...110.........120.........130...
 
   157..160.........170.........180.........190.........200.........210.........220.........230......
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Query Sequence  ASLRELGLAVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWRWLN
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Template Sequence  MFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYS
Template Known Secondary structure 

TT
GGGS
S

TTTSBTT

TS

SSSGGGGSBS
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   134.....140.........150.........160.........170.........180.........190.........200.........210...
 
   237..240.........250.........260.........270.........280.........290.........300.........310......
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Query Sequence  EKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFAVLASGSFFS
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Template Sequence  ESLARYGK. SPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEG. . . EVARCKQLICDPSYVPD
Template Known Secondary structure  T

GGG
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STT
TTT
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BTTB


TT...B
S
GGG
GG
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   214.....220. ........230.........240.........250.........260.........270.. .......280.........
 
   317
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Query Sequence  G
Query Conservation   
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Template Conservation   
Template Sequence  R
Template Known Secondary structure  G
Template Predicted Secondary structure 
Template SS confidence 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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