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Job DescriptionP13033
Confidence99.54%DateThu Jan 5 11:33:29 GMT 2012
Rank141Aligned Residues356
% Identity13%Templatec1f8sA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:l-amino acid oxidase; PDBTitle: crystal structure of l-amino acid oxidase from calloselasma2 rhodostoma, complexed with three molecules of o-aminobenzoate.
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.... .....40.........50.........60.........70.........80.
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Query Sequence  DTVIMGGGLAGLLCGLQLQKHGLRCAIVTRG. . QSALHFSSGSLDLLSHLPDGQPVTDIHSGLESLRQQAPAHPYSLLEP
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Template Sequence  HVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTY. . . . . . . . . . . . . . . . . . . . . . . . . . RNEEAGWYANLGP
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BTT

SSSSSBTT

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   35....40.........50.........60.........70..... ....80........
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
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Query Sequence  QRVLDLACQAQALIAESGAQLQGSVELAHQRVTPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRE
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Template Conservation              
   


                                                             
Template Sequence  MRLPEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEEL
Template Known Secondary structure 

TT
TT



S

TTSTT
GGGG




TTTTT

T
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   8990.........100.........110.........120.........130.........140.........150.........160........
 
   162.......170.........180.........190.........200.........210.........220.........230.........240.
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Query Sequence  LGLAVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWRWLNEKLPC
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Template Sequence  KRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNEDSGYYV. . . . . . . . . . . . . . . . . SFIESLKHDDIFAYEK
Template Known Secondary structure  S
GGGSBTT


TT
GGGTTS.................BTT

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   169170.........180.........190.........200.........210..... ....220.........230.
 
   242.......250.........260.........270.........280.........290.... .....300.........310..
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Query Sequence  SLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWT. RNHADIPLRPRFAVLASG. . . . . . . .
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Template Sequence  RFDEIVDGMD. . . . . . . . KLPTAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIK
Template Known Secondary structure 
TT
TT........TGGGSS

SS

SSS


S
S
TTS
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   232.......240. ........250.........260.........270.........280.........290.........300...
 
   313
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . S
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Template Conservation      
                                                            
              
Template Sequence  FNPPLLPKKAHALRSVHYRSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYPNHNFTNGVGVIIAYGIGDDANFFQA
Template Known Secondary structure  S





SS
GGGGGT

SSSSTT


SS

TT

TT
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   304.....310.........320.........330.........340.........350.........360.........370.........380...
 
   314.....320.........330.........340.........350.........360.........370. ........380.........
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Query Sequence  FFSGGLVAERNGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDETLRPSQA. . . . GQTIENLFAIGSVLGGFD
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Template Conservation               
    
                 
       
                       
  

       
Template Sequence  LDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKYAMGGITTFTPYQFQHFSDPLTASQGRIYFAGEYTAQAH
Template Known Secondary structure  S
TT

GGG
TTT
SS


TT

BTT
SGGGSSSS
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   384.....390.........400.........410.........420.........430.........440.........450.........460...
 
   390.........400.........410.....
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Query Sequence  PIAQGCGGGVCAVSALHAAQQIAQRA
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Template Sequence  GWIDS. . . . . TIKSGLRAARDVNLAS
Template Known Secondary structure  S
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   464.... .470.........480....
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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