Job Description P64624 Confidence 95.67% Date Thu Jan 5 12:10:00 GMT 2012 Rank 6 Aligned Residues 173 % Identity 18% Template c3cloC_ PDB info PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator containing a2 luxr dna binding domain (np_811094.1) from bacteroides3 thetaiotaomicron vpi-5482 at 2.04 a resolution Resolution 2.04 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.									.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.																						.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.																						.	.	.	.	.
Query Sequence		I	L	K	S	Y	E	A	V	V	D	G	L	A	M	L	I	G	S	H	C	E	I	V	L	H	S	L	Q	D	L	K	C	S	A	I	R	I	A	N	G	E	H	T	G	R	K	.	.	.	.	.	.	.	.	I	G	S	P	I	T	D	L	A	L	R	M	L	H	D	M	T	G	A	D	S	.	.	.	.	.
Query Conservation																																																.	.	.	.	.	.	.	.																						.	.	.	.	.
Alig confidence																			.	.																												.	.	.	.	.	.	.	.																						.	.	.	.	.
Template Conservation																			.	.
Template Sequence		I	V	E	Q	H	Q	Q	F	V	R	S	L	T	E	V	N	G	.	.	G	C	A	V	I	S	D	L	S	N	R	K	S	Y	V	T	V	H	P	W	A	N	F	L	G	L	T	P	E	E	A	A	L	S	V	I	D	S	X	D	E	D	C	I	Y	R	R	I	H	P	E	D	L	V	E	K	R	L	X	E	Y
Template Known Secondary structure																		S	.	.								T	T	T	T								T	T		G	G	G												T	T				T					T	T	B
Template Predicted Secondary structure																			.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.			.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
																			95	.	.	.	.	100	.	.	.	.	.	.	.	.	.				110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	S	K	C	Y	F	T	R	A	K	S	G	V	L	.	.	.	M	K	S	L	T	I	A	I	R	N	R	E	Q	R	V	I	G	L	L	C	I	N	M	N	L	D	V	P	F	S	Q	I	M	S	T	F	V	P	P	E	T	P	D	V	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.																											.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.
Template Sequence		K	F	F	Q	K	T	F	S	X	S	P	G	E	R	L	K	Y	R	G	R	C	R	L	R	X	X	N	E	K	G	V	Y	Q	Y	I	D	N	L	V	Q	I	X	Q	N	T	P	A	G	N	V	W	L	I	F	C	L	Y	S	L	S	A	.	.	.	.	.	.	.	.	.	.	D	Q	R	P	E	Q	G	I	Y
Template Known Secondary structure									T	S						T	T												T	T	S																T	T	S													S	.	.	.	.	.	.	.	.	.	.						S	S
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.											.	.	.	.	.	170	.	.	.
		155	.								.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.
Query Sequence		S	S	.	.	.	.	.	.	.	V	N	F	A	S	S	V	E	D	L	V	T	Q	T	L	E	F	T	I	E	E	V	N	A	D	R	N	V	S	N	N	A	K	N	R	Q	I	V	L	N	L	Y	E	K	G	I	F	D	I	K	D	A	I	N	Q	V	A	D	R	L	N	I	S	K	H	T	V	Y	L	Y	I
Query Conservation				.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.									.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.									.	.	.	.	.
Template Sequence		A	T	I	T	Q	X	E	R	G	E	V	E	T	L	S	L	S	E	E	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	N	I	L	S	E	R	E	K	E	.	.	I	L	R	C	I	R	K	G	.	.	.	.	.	L	S	S	K	E	I	A	A	T	L	Y	I	S	V	N	T	V	N	R	H	R
Template Known Secondary structure							T	T	T	T												.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S	S							.	.								T	.	.	.	.	.										T	T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.									.	.	.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.															.	.	.	.	.	.	200	.	.	.			.	.	.	.	.	.	210	.						.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		228	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	F	K	S	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	N	I	L	E	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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