Job Description P07862 Confidence 100.00% Date Thu Jan 5 11:00:37 GMT 2012 Rank 4 Aligned Residues 301 % Identity 35% Template c3i12A_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine-d-alanine ligase a; PDBTitle: the crystal structure of the d-alanyl-alanine synthetase a from2 salmonella enterica subsp. enterica serovar typhimurium str. lt2 Resolution 2.20 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	D	K	I	A	V	L	L	G	G	T	S	A	E	R	E	V	S	L	N	S	G	A	A	V	L	A	G	L	R	E	G	G	I	D	A	Y	P	V	D	P	K	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	L	R	V	G	I	V	F	G	G	K	S	A	E	H	E	V	S	L	Q	S	A	K	N	I	V	D	A	I	D	K	T	R	F	D	V	V	L	L	G	I	D	K	A	G	Q	W	H	V	N	D	A	E	N	Y	L	Q	N	A	D	D	P	A	H	I	A	L	R	P	S	A	I	S	L	A	Q	V	P	G	K
Template Known Secondary structure												S	S	T	T															S		T	T	T										T	T	S							S	S	S	S	B	S	S	T	T		T	T	T			B				S		B					T	T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
									46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	D	V	T	Q	L	K	S	M	G	F	Q	K	V	F	I	A	L	H	G	R	G	G	E	D	G	T	L	Q	G	M	L	E	L	M	G	L	P	Y	T	G	S	G	V	M	A	S	A	L	S	M	D	K	L	R	S	K	L	L	W	Q	G	A	G	L	P	V	A	P	W	V	A	L	T
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	Q	H	Q	L	I	N	A	Q	N	G	Q	P	L	P	T	V	D	V	I	F	P	I	V	H	G	T	L	G	E	D	G	S	L	Q	G	M	L	R	V	A	N	L	P	F	V	G	S	D	V	L	S	S	A	A	C	M	D	K	D	V	A	K	R	L	L	R	D	A	G	L	N	I	A	P	F	I	T	L	T
Template Known Secondary structure		S	S	S					T	T	T			B					S								S	T	T	T	T	S	S									T	T			B	S	S																						T	T			B
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	E	F	E	K	G	L	S	D	K	Q	L	A	E	I	S	A	L	G	L	P	V	I	V	K	P	S	R	E	G	S	S	V	G	M	S	K	V	V	A	E	N	A	L	Q	D	A	L	R	L	A	F	Q	H	D	E	E	V	L	I	E	K	W	L	S	G	P	E	F	T	V	A	I	L	G	E	E	I	L
Query Conservation
Alig confidence													.	.	.
Template Conservation													.	.	.
Template Sequence		R	T	N	R	H	A	F	S	F	A	E	.	.	.	V	E	S	R	L	G	L	P	L	F	V	K	P	A	N	Q	G	S	S	V	G	V	S	K	V	A	N	E	A	Q	Y	Q	Q	A	V	A	L	A	F	E	F	D	H	K	V	V	V	E	Q	G	I	K	G	R	E	I	E	C	A	V	L	G	N	D	N	P
Template Known Secondary structure		T	T	T	G	G	G						.	.	.							S	S						T	T			T	T	T	T					S	S																S										S										S	S	S
Template Predicted Secondary structure													.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.				.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		199	200			.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence		P	S	.	.	I	R	I	Q	P	S	G	T	F	Y	D	Y	E	A	K	Y	L	S	D	E	T	Q	Y	F	C	P	A	G	L	E	A	S	Q	E	A	N	L	Q	A	L	V	L	K	A	W	T	T	L	G	C	K	G	W	G	R	I	D	V	M	L	D	S	D	G	Q	F	Y	L	L	E	A	N	T	S	P	G
Query Conservation				.	.
Alig confidence				.	.
Template Conservation
Template Sequence		Q	A	S	T	C	G	E	I	V	L	N	S	E	F	Y	D	T	K	Y	I	D	D	N	G	A	Q	V	V	V	P	A	Q	I	P	S	E	V	N	D	K	I	R	A	I	A	I	Q	A	Y	Q	T	L	G	C	A	G	M	A	R	V	D	V	F	L	T	A	D	N	E	V	V	I	N	E	I	N	T	L	P	G
Template Known Secondary structure													T	T			T	T	T	T	S	G	G	G	G					S	S		S	S																			T	T													T	T										S	S
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	S	H	S	L	V	P	M	A	A	R	Q	A	G	M	S	F	S	Q	L	V	V	R	I	L	E	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	T	N	I	S	M	Y	P	K	L	W	Q	A	S	G	L	G	Y	T	D	L	I	S	R	L	I	E	L	A
Template Known Secondary structure			S	T	T									T	T	T
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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