Job Description P07862 Confidence 100.00% Date Thu Jan 5 11:00:37 GMT 2012 Rank 11 Aligned Residues 292 % Identity 41% Template c2zdqA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of d-alanine:d-alanine ligase with atp2 and d-alanine:d-alanine from thermus thermophius hb8 Resolution 2.30 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40																						.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	K	I	A	V	L	L	G	G	T	S	A	E	R	E	V	S	L	N	S	G	A	A	V	L	A	G	L	R	E	G	G	I	D	A	Y	P	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	K	E	V	D	V	T	Q	L	K	S	M	G	F	Q	K	V	F	I	A
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	R	V	L	L	I	A	G	G	V	S	P	E	H	E	V	S	L	L	S	A	E	G	V	L	R	H	I	P	F	P	T	D	L	A	V	I	A	Q	D	G	R	W	L	L	G	E	K	A	L	T	A	L	E	A	K	A	A	P	E	G	E	H	P	F	P	P	P	L	S	W	E	R	Y	D	V	V	F	P	L
Template Known Secondary structure											S	S	T	T																S	S									T	T	S					T									T	S						S	B		S	S					G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	G	R	G	G	E	D	G	T	L	Q	G	M	L	E	L	M	G	L	P	Y	T	G	S	G	V	M	A	S	A	L	S	M	D	K	L	R	S	K	L	L	W	Q	G	A	G	L	P	V	A	P	W	V	A	L	T	R	A	E	F	E	K	G	L	S	D	K	Q	L	A	E	I	S	A	L	G	L	P	V
Query Conservation
Alig confidence																																																																			.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.	.	.	.	.
Template Sequence		L	H	G	R	F	G	E	D	G	T	V	Q	G	F	L	E	L	L	G	K	P	Y	V	G	A	G	V	A	A	S	A	L	C	M	D	K	D	L	S	K	R	V	L	A	Q	A	G	V	P	V	V	P	W	V	A	V	R	K	G	E	P	P	V	V	P	.	.	.	.	.	.	.	.	.	.	F	D	P	P	F
Template Known Secondary structure				S	T	T	T	T	S	S										T			B	S	S																						T	T											T	T	S						.	.	.	.	.	.	.	.	.	.	S		S
Template Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.											.	.	.	.	150
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.				.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure																																														.														.	.	.
Query SS confidence																																														.														.	.	.
Query Sequence		I	V	K	P	S	R	E	G	S	S	V	G	M	S	K	V	V	A	E	N	A	L	Q	D	A	L	R	L	A	F	Q	H	D	E	E	V	L	I	E	K	W	L	S	G	.	P	E	F	T	V	A	I	L	G	E	E	I	L	.	.	.	P	S	I	R	I	Q	P	S	G	T	F	Y	D	Y	E	A	K	Y	L
Query Conservation																																														.														.	.	.
Alig confidence																																														.														.	.	.
Template Conservation
Template Sequence		F	V	K	P	A	N	T	G	S	S	V	G	I	S	R	V	E	R	F	Q	D	L	E	A	A	L	A	L	A	F	R	Y	D	E	K	A	V	V	E	K	A	L	S	P	V	R	E	L	E	V	G	V	L	G	N	V	F	G	E	A	S	P	V	G	E	V	R	Y	E	A	P	F	Y	D	Y	E	T	K	Y	T
Template Known Secondary structure						T	T			T	T	T	T						S	G	G	G									T	T	T		S									S	S										S	S	S	S												S	S	S	S	S							S
Template Predicted Secondary structure
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	E	T	Q	Y	F	C	P	A	G	L	E	A	S	Q	E	A	N	L	Q	A	L	V	L	K	A	W	T	T	L	G	C	K	G	W	G	R	I	D	V	M	L	D	S	D	G	Q	F	Y	L	L	E	A	N	T	S	P	G	M	T	S	H	S	L	V	P	M	A	A	R	Q	A	G	M	S	F	S	Q	L
Query Conservation
Alig confidence																																														.
Template Conservation																																														.
Template Sequence		P	G	R	A	E	L	L	I	P	A	P	L	D	P	G	T	Q	E	T	V	Q	E	L	A	L	K	A	Y	K	V	L	G	V	R	G	M	A	R	V	D	F	F	L	A	.	E	G	E	L	Y	L	N	E	L	N	T	I	P	G	F	T	P	T	S	M	Y	P	R	L	F	E	A	G	G	V	A	Y	P	E	L
Template Known Secondary structure		T	T	S	S				S	S																							T			S										.	T	T									S	S				S	T	T		S							T	T	T
Template Predicted Secondary structure																																														.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		298	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	R	I	L	E	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	R	R	L	V	E	L	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		310	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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