Job Description P07862 Confidence 100.00% Date Thu Jan 5 11:00:37 GMT 2012 Rank 25 Aligned Residues 278 % Identity 18% Template c2yyaB_ PDB info PDB header:ligase Chain: B: PDB Molecule:phosphoribosylamine--glycine ligase; PDBTitle: crystal structure of gar synthetase from aquifex aeolicus Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.			.	.	.	.	.	.	.	40	.	.	.																		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
Predicted Secondary structure																																.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	K	I	A	V	L	L	G	G	T	S	A	E	R	E	V	S	L	N	S	G	A	A	V	L	A	G	L	R	E	.	.	G	G	I	D	A	Y	P	V	D	P	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	D	V	T	Q	L	K	S	M	G	F	Q	K	V	F	I	A	L	H
Query Conservation																																.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.											.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template Conservation													.	.	.	.	.	.	.	.	.																																																										.	.
Template Sequence		M	K	V	L	V	V	G	N	G	G	R	.	.	.	.	.	.	.	.	.	E	H	A	I	A	W	K	V	A	Q	S	P	L	V	K	E	L	Y	V	A	K	G	N	A	G	I	W	E	I	A	K	R	V	D	I	S	P	T	D	V	E	K	L	A	E	F	A	K	N	E	G	V	D	F	T	I	V	.	.	G
Template Known Secondary structure										S			.	.	.	.	.	.	.	.	.									T	T	S	T	T		S						S			T	T	G	G	G	T	S					S		T	T													T		S					.	.
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.																																																										.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.										.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.			.
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	G	G	E	D	G	T	L	Q	G	M	L	E	L	M	G	L	P	Y	T	G	S	G	V	M	A	S	A	L	S	M	D	K	L	R	S	K	L	L	W	Q	G	A	G	L	P	V	A	P	W	V	A	L	T	R	A	E	F	E	K	G	L	S	D	K	Q	L	A	E	I	S	A	L	G	L	P	V	I	V
Query Conservation
Alig confidence																																																										.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.
Template Sequence		P	E	A	P	L	V	E	G	I	V	D	E	F	E	K	R	G	L	K	I	F	G	P	N	K	E	A	A	K	L	E	G	S	K	A	F	A	K	T	F	M	K	K	Y	G	I	P	T	A	R	Y	E	V	F	T	D	.	.	.	.	.	.	.	F	E	K	A	K	E	Y	V	E	K	V	G	A	P	I	V	V
Template Known Secondary structure		S	S					T	T								T	T					S			T	T	T	T																	T			B							S		.	.	.	.	.	.	.									T	T	T		S	S
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.								.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.							.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.			.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.																																.	.
Query SS confidence																																	.	.	.	.	.	.																																.	.
Query Sequence		K	P	S	R	E	G	S	S	V	G	M	S	K	V	V	A	E	N	A	L	Q	D	A	L	R	L	A	F	Q	H	D	.	.	.	.	.	.	E	E	V	L	I	E	K	W	L	S	G	P	E	F	T	V	A	I	L	G	E	E	I	L	P	S	I	R	I	Q	P	.	.	S	G	T	F	Y	D	Y	E	A	K
Query Conservation																																	.	.	.	.	.	.																																.	.
Alig confidence																																	.	.	.	.	.	.																																.	.
Template Conservation
Template Sequence		K	A	D	G	L	A	A	G	K	G	A	V	V	C	E	T	V	E	K	A	I	E	T	L	D	R	F	L	N	K	K	I	F	G	K	S	S	E	R	V	V	I	E	E	F	L	E	G	E	E	A	S	Y	I	V	M	I	N	G	D	R	Y	V	P	L	P	T	S	Q	D	H	K	R	L	L	D	E	D	K	G
Template Known Secondary structure				S	S		S	T	T								S													T	S			S	T	T	T	S	S	S																				T	T								B								T	T	T
Template Predicted Secondary structure
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.						230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.			250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.																					.	.
Query SS confidence																.	.	.	.	.																					.	.
Query Sequence		Y	L	S	D	E	T	Q	Y	F	C	P	A	G	L	.	.	.	.	.	E	A	S	Q	E	A	N	L	Q	A	L	V	L	K	A	W	T	T	L	G	.	.	C	K	G	W	G	R	I	D	V	M	L	D	S	D	G	Q	F	Y	L	L	E	A	N	T	S	P	G	M	T	S	H	S	L	V	P	M	A	A	R
Query Conservation																.	.	.	.	.																					.	.
Alig confidence																.	.	.	.	.																					.	.																.												.	.	.
Template Conservation																																																										.												.	.	.
Template Sequence		P	N	T	G	G	M	G	A	Y	S	P	T	P	V	I	N	E	E	V	E	K	R	I	R	E	E	I	V	E	R	V	I	K	G	L	K	E	E	G	I	Y	Y	R	G	F	L	Y	A	G	L	M	I	T	K	E	G	.	P	K	V	L	E	F	N	V	R	L	G	.	.	.	D	P	E	A	Q	P	I	L	M
Template Known Secondary structure					S		S					S		T	T	S												T											T	T															T	T		.								S	S			.	.	.	T	T	T
Template Predicted Secondary structure																																																										.												.	.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.				290	.	.	.	.	.	.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	G	M	S	F	S	Q	L	V	V	R	I	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	V	K	N	D	F	L	E	T	L	L	N	F	Y
Template Known Secondary structure		T	B		S
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions