Phyre 2 alignment of P07862 with c2qk4A

Job Description P07862
Confidence 100.00% Date Thu Jan 5 11:00:37 GMT 2012

Rank 31 Aligned Residues 277

% Identity 17% Template c2qk4A_

PDB info PDB header:ligase Chain: A: PDB Molecule:trifunctional purine biosynthetic protein adenosine-3; PDBTitle: human glycinamide ribonucleotide synthetase

Resolution 2.45 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.			.	.	.	.	.	.	.	40	.	.	.	.																				.	.	.	.	.	50	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	M	T	D	K	I	A	V	L	L	G	G	T	S	A	E	R	E	V	S	L	N	S	G	A	A	V	L	A	G	L	R	E	.	.	G	G	I	D	A	Y	P	V	D	P	K	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	V	T	Q	L	K	S	M	G	F	Q	K	V	F
Query Conservation																																	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.											.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.
Template Sequence	M	A	A	R	V	L	I	I	G	S	G	G	R	.	.	.	.	.	.	.	.	.	E	H	T	L	A	W	K	L	A	Q	S	H	H	V	K	Q	V	L	V	A	P	G	N	A	G	T	A	C	S	E	K	I	S	N	T	A	I	S	I	S	D	H	T	A	L	A	Q	F	C	K	E	K	K	I	E	F	V	V
Template Known Secondary structure		S									S			.	.	.	.	.	.	.	.	.									T	T		T	T											G	G	G	S	B	S	S	S								S	S													T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.
Template SS confidence
	1	.	.	.	.	.	.	.	.	10	.	.	.										.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.

	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	A	L	H	G	R	G	G	E	D	G	T	L	Q	G	M	L	E	L	M	G	L	P	Y	T	G	S	G	V	M	A	S	A	L	S	M	D	K	L	R	S	K	L	L	W	Q	G	A	G	L	P	V	A	P	W	V	A	L	T	R	A	E	F	E	K	G	L	S	D	K	Q	L	A	E	I	S	A	L	G	L
Query Conservation
Alig confidence		.	.																																																										.	.	.	.	.	.	.
Template Conservation		.	.																																																										.	.	.	.	.	.	.
Template Sequence	V	.	.	G	P	E	A	P	L	A	A	G	I	V	G	N	L	R	S	A	G	V	Q	C	F	G	P	T	A	E	A	A	Q	L	E	S	S	K	R	F	A	K	E	F	M	D	R	H	G	I	P	T	A	Q	W	K	A	F	T	K	.	.	.	.	.	.	.	P	E	E	A	C	S	F	I	L	S	A	D	F
Template Known Secondary structure		.	.		S	S					T	T								T	T					S			T	T	T	T					B											T	T			B							S	S	.	.	.	.	.	.	.												S	S
Template Predicted Secondary structure		.	.																																																										.	.	.	.	.	.	.
Template SS confidence
	72			.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.								130	.	.	.	.	.	.	.	.	.	140	.	.

	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	V	I	V	K	P	S	R	E	G	S	S	V	G	M	S	K	V	V	A	E	N	A	L	Q	D	A	L	R	L	A	F	Q	H	D	E	E	V	L	I	E	K	W	L	S	G	P	E	F	T	V	A	I	L	G	E	E	I	L	P	S	I	R	I	Q	P	S	G	T	F	Y	D	Y	E	A	K	Y	L	S	D
Query Conservation
Alig confidence									.	.																								.
Template Conservation									.	.																								.
Template Sequence	P	A	L	V	V	K	A	S	.	.	G	L	K	G	V	I	V	A	K	S	K	E	E	A	C	K	A	V	Q	E	I	M	Q	.	E	E	T	I	V	I	E	E	L	L	D	G	E	E	V	S	C	L	C	F	T	D	G	K	T	V	A	P	M	P	P	A	Q	D	H	K	R	L	L	E	G	D	G	G	P	N
Template Known Secondary structure								S	.	.	B								S	S												T	T	.												S											S	S								B								T	T	T
Template Predicted Secondary structure									.	.																								.
Template SS confidence
	143	.	.	.	.	.	.	150			.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.

	220	.	.	.								.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250			.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure					.	.	.	.	.	.	.																												.	.
Query SS confidence					.	.	.	.	.	.	.																												.	.
Query Sequence	E	T	Q	Y	.	.	.	.	.	.	.	F	C	P	A	G	L	E	A	S	Q	E	A	N	L	Q	A	L	V	L	K	A	W	T	T	L	G	C	.	.	K	G	W	G	R	I	D	V	M	L	D	S	D	G	Q	F	Y	L	L	E	A	N	T	S	P	G	M	T	S	H	S	L	V	P	M	A	A	R	Q	A
Query Conservation					.	.	.	.	.	.	.																												.	.
Alig confidence					.	.	.	.	.	.	.																												.	.															.												.	.	.
Template Conservation																																																							.												.	.	.
Template Sequence	T	G	G	M	G	A	Y	C	P	A	P	Q	V	S	N	D	L	L	L	K	I	K	D	T	V	L	Q	R	T	V	D	G	M	Q	Q	E	G	T	P	Y	T	G	I	L	Y	A	G	I	M	L	T	K	N	G	.	P	K	V	L	E	F	N	C	R	F	G	.	.	.	D	P	E	C	Q	V	I	L	P	L	L
Template Known Secondary structure									S		T	T													T											T	T															T	T		.								S	S			.	.	.	T	T	T					G	G	G	B
Template Predicted Secondary structure																																																							.												.	.	.
Template SS confidence
	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.		.	.	.	.	.	.	290	.	.	.	.				.	.	.	.	.	300	.	.	.	.	.

	291	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	M	S	F	S	Q	L	V	V	R	I	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence	K	S	D	L	Y	E	V	I	Q	S	T	L
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
	306	.	.	.	310	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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