Job Description P07862 Confidence 100.00% Date Thu Jan 5 11:00:37 GMT 2012 Rank 12 Aligned Residues 278 % Identity 29% Template c2pvpB_ PDB info PDB header:ligase Chain: B: PDB Molecule:d-alanine-d-alanine ligase; PDBTitle: crystal structure of d-alanine-d-alanine ligase from helicobacter2 pylori Resolution 2.40 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	D	K	I	A	V	L	L	G	G	T	S	A	E	R	E	V	S	L	N	S	G	A	A	V	L	A	G	L	R	E	G	G	I	D	A	Y	P	V	D	P	K	E	V	D	V	T	Q	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	M	E	F	C	V	L	F	G	G	A	S	F	E	H	E	I	S	I	V	S	A	I	A	L	K	G	V	L	K	D	R	I	K	Y	F	I	F	L	D	E	N	H	H	F	Y	L	I	E	E	S	N	M	H	S	K	Y	F	A	Q	I	K	E	K	K	L	P	P	L	I	L	T	H	N	G	L	L	K	N	S
Template Known Secondary structure												S	S	T	T																G	G	G									T	T								G	G	G		S						T	G	G	G	G					B				T	T
Template Predicted Secondary structure
Template SS confidence
		0	.	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
							52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	S	M	G	F	Q	K	V	F	I	A	L	H	G	R	G	G	E	D	G	T	L	Q	G	M	L	E	L	M	G	L	P	Y	T	G	S	G	V	M	A	S	A	L	S	M	D	K	L	R	S	K	L	L	W	Q	G	A	G	L	P	V	A	P	W	V	A	L	T	R	A	E	F	E	K	G	L
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																																																																											.
Template Conservation																																																																																	.
Template Sequence		F	L	G	A	K	I	I	E	L	P	L	V	I	N	L	V	H	G	G	D	G	E	D	G	K	L	A	S	L	L	E	F	Y	R	I	A	F	I	G	P	R	I	E	A	S	V	L	S	Y	N	K	Y	L	T	K	L	Y	A	K	D	L	G	I	K	T	L	D	Y	V	L	L	N	E	K	N	R	A	N	A	.
Template Known Secondary structure		T	T									S							S					S	S									T	T					S											S											T	T		B									T	T	T					.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		S	D	K	Q	L	A	E	I	S	A	L	G	L	P	V	I	V	K	P	S	R	E	G	S	S	V	G	M	S	K	V	V	A	E	N	A	L	Q	D	A	L	R	L	A	F	Q	H	D	E	E	V	L	I	E	K	W	L	S	G	.	P	E	F	T	V	A	I	L	G	E	E	I	L	P	S	I	R	I	Q	P
Query Conservation																																																													.
Alig confidence		.	.	.	.	.																																																							.																	.	.	.	.
Template Conservation		.	.	.	.	.																																																																								.	.	.	.
Template Sequence		.	.	.	.	.	L	D	L	M	N	F	N	F	P	F	I	V	K	P	S	N	A	G	S	S	L	G	V	N	V	V	K	E	E	K	E	L	I	Y	A	L	D	S	A	F	E	Y	S	K	E	V	L	I	E	P	F	I	Q	G	V	K	E	Y	N	L	A	G	C	K	I	K	K	D	F	C	F	.	.	.	.
Template Known Secondary structure		.	.	.	.	.		T	T					S							S	S		S	T	T	T	T						S	T												T	T		S									T	T												T	T					.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.																																																																								.	.	.	.
Template SS confidence
							159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	T	F	Y	D	Y	E	A	K	Y	L	S	D	E	T	Q	Y	F	C	P	A	G	L	E	A	S	Q	E	A	N	L	Q	A	L	V	L	K	A	W	T	T	L	G	C	K	G	W	G	R	I	D	V	M	L	D	S	D	G	Q	F	Y	L	L	E	A	N	T	S	P	G	M	T	S	H	S	L	V	P	M
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.																																															.
Template Conservation		.	.	.	.	.	.	.	.	.	.																																															.
Template Sequence		.	.	.	.	.	.	.	.	.	.	S	Y	I	E	E	P	N	K	Q	P	K	A	S	L	S	N	A	L	E	E	Q	L	K	E	N	F	K	K	L	Y	S	D	L	F	D	G	A	I	I	R	C	D	F	F	V	I	.	E	N	E	V	Y	L	N	E	I	N	P	I	P	G	S	L	A	N	Y	L	F	D	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.				B		T	T																								T	T	T	T	T	T											.	T	T									S	S		G	G	G	G	G	G	G	S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																															.
Template SS confidence
												230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	R	Q	A	G	M	S	F	S	Q	L	V	V	R	I	L	E	L
Query Conservation
Alig confidence			.	.	.	.
Template Conservation			.	.	.	.
Template Sequence		F	.	.	.	.	K	T	T	L	E	N	L	A	Q	S	L	P	K	T
Template Known Secondary structure			.	.	.	.											S
Template Predicted Secondary structure			.	.	.	.
Template SS confidence
		316					.	.	.	320	.	.	.	.	.	.	.	.	.	330

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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