Job Description P07862 Confidence 100.00% Date Thu Jan 5 11:00:37 GMT 2012 Rank 30 Aligned Residues 279 % Identity 19% Template c2ip4A_ PDB info PDB header:ligase Chain: A: PDB Molecule:phosphoribosylamine--glycine ligase; PDBTitle: crystal structure of glycinamide ribonucleotide synthetase from2 thermus thermophilus hb8 Resolution 2.80 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.			.	.	.	.	.	.	.	40	.	.	.																	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
Predicted Secondary structure																																.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	K	I	A	V	L	L	G	G	T	S	A	E	R	E	V	S	L	N	S	G	A	A	V	L	A	G	L	R	E	.	.	G	G	I	D	A	Y	P	V	D	P	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	D	V	T	Q	L	K	S	M	G	F	Q	K	V	F	I	A	L	H	G
Query Conservation																																.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.					.	.	.	.	.	.	.	.									.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template Conservation											.					.	.	.	.	.	.	.	.																																																							.	.
Template Sequence		X	K	V	L	V	V	G	S	G	.	G	R	E	H	.	.	.	.	.	.	.	.	A	L	L	W	K	A	A	Q	S	P	R	V	K	R	L	Y	A	A	P	G	N	A	G	X	E	A	L	A	E	L	V	P	W	N	G	D	V	E	A	L	A	D	W	A	L	A	E	G	I	D	L	T	L	V	.	.	G	P
Template Known Secondary structure									S	S	.					.	.	.	.	.	.	.	.								T		S	S											T	T	G	G	G	T	S							S													T							.	.		S
Template Predicted Secondary structure											.					.	.	.	.	.	.	.	.																																																							.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.		10	.	.	.									.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.			.	.
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	G	E	D	G	T	L	Q	G	M	L	E	L	M	G	L	P	Y	T	G	S	G	V	M	A	S	A	L	S	M	D	K	L	R	S	K	L	L	W	Q	G	A	G	L	P	V	A	P	W	V	A	L	T	R	A	E	F	E	K	G	L	S	D	K	Q	L	A	E	I	S	A	L	G	L	P	V	I	V	K
Query Conservation
Alig confidence																																																									.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.
Template Sequence		E	A	P	L	V	E	G	I	A	D	A	F	Q	A	R	G	L	L	L	F	G	P	T	Q	K	A	A	X	I	E	G	S	K	A	F	A	K	G	L	X	E	R	Y	G	I	P	T	A	R	Y	R	V	F	R	E	.	.	.	.	.	.	.	P	L	E	A	L	A	Y	L	E	E	V	G	V	P	V	V	V	K
Template Known Secondary structure		S					T	T									T					S																						T				B							S	S	.	.	.	.	.	.	.													S	S
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.								.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.			.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.			.	.	.	.	.	220
Predicted Secondary structure																															.	.																																										.	.
Query SS confidence																															.	.																																										.	.
Query Sequence		P	S	R	E	G	S	S	V	G	M	S	K	V	V	A	E	N	A	L	Q	D	A	L	R	L	A	F	Q	H	.	.	D	E	E	V	L	I	E	K	W	L	S	G	P	E	F	T	V	A	I	L	G	E	E	I	L	P	S	I	R	I	Q	P	S	G	T	F	Y	D	Y	E	A	.	.	K	Y	L	S	D	E
Query Conservation																															.	.																																										.	.
Alig confidence																															.	.																																										.	.
Template Conservation
Template Sequence		D	S	G	L	A	A	G	K	G	V	T	V	A	F	D	L	H	Q	A	K	Q	A	V	A	N	I	L	N	R	A	E	G	G	E	V	V	V	E	E	Y	L	E	G	E	E	A	T	V	L	A	L	T	D	G	E	T	I	L	P	L	L	P	S	Q	D	H	K	R	L	L	D	G	D	Q	G	P	X	T	G	G
Template Known Secondary structure			T	T	S		S	S	T	T					S													T	T	S	S	S												S										S	S	S								B								T	T	T						S
Template Predicted Secondary structure
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.					240	.	.	.	.	.	.	.	.	.	250			.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure																					.	.	.	.												.	.
Query SS confidence																					.	.	.	.												.	.
Query Sequence		T	Q	Y	F	C	P	A	G	L	E	A	S	Q	E	A	N	L	Q	A	.	.	.	.	L	V	L	K	A	W	T	T	L	G	C	.	.	K	G	W	G	R	I	D	V	M	L	D	S	D	G	Q	F	Y	L	L	E	A	N	T	S	P	G	M	T	S	H	S	L	V	P	M	A	A	R	Q	A	G	M	S	F
Query Conservation																					.	.	.	.												.	.
Alig confidence																					.	.	.	.												.	.															.												.	.	.
Template Conservation																																																				.												.	.	.
Template Sequence		X	G	A	V	A	P	Y	P	X	D	E	A	T	L	R	R	V	E	E	E	I	L	G	P	L	V	R	G	L	R	A	E	G	V	V	Y	R	G	V	V	Y	A	G	L	X	L	T	R	E	G	.	P	K	V	L	E	F	N	A	R	F	G	.	.	.	D	P	E	A	Q	A	L	L	P	L	L	E	N	D	L
Template Known Secondary structure		S					S															T											T	T															S	S		.								S	S			.	.	.	T	T						T	T	T	B		S
Template Predicted Secondary structure																																																				.												.	.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.				.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		295	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	L	V	V	R	I	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	L	A	L	R	V	A	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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