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Job DescriptionP07862
Confidence99.95%DateThu Jan 5 11:00:37 GMT 2012
Rank56Aligned Residues234
% Identity16%Templatec1pk8D_
PDB info PDB header:membrane proteinChain: D: PDB Molecule:rat synapsin i; PDBTitle: crystal structure of rat synapsin i c domain complexed to2 ca.atp
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   54.....60. ........70..... ....80.........90.........100.........110.........120.........
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Query Sequence  GFQKVFIA. LHGRGGEDGTLQGM. . . LELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDK
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Template Sequence  KPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNS. LHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHKE
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SSGGG
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   179180.........190.........200.........210..... ....220.........230.........240.........250.......
 
   130.........140.........150.........160.........170.........180.... .....190.........200........
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Query Sequence  QLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLS. GPEFTVAILGEEILPSIRIQPSGT
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Template Sequence  . . . MLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRVQKIGQNYKAYMRTSVSGN
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   258.260.........270.........280.........290.........300.........310.........320.........330....
 
   209210.........220.........230.........240.........250.........260.........270.........280........
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Query Sequence  FYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAAR
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Template Sequence  W. . . . . . KTNTGSAMLEQIAMSD. . . . RYKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGS. . . . SMPLIGDHQD
Template Known Secondary structure  S......STTSSS


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   335 ....340.........350. ........360.........370.........380.........390 .........400
 
   289290.........300.....
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Query Sequence  QAGMSFSQLVVRILELA
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Template Sequence  EDKQLIVELVVNKMTQA
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   401........410.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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