Job Description P07862 Confidence 99.96% Date Thu Jan 5 11:00:37 GMT 2012 Rank 54 Aligned Residues 232 % Identity 16% Template c1i7nA_ PDB info PDB header:neuropeptide Chain: A: PDB Molecule:synapsin ii; PDBTitle: crystal structure analysis of the c domain of synapsin ii2 from rat brain Resolution 1.90 Å

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		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70					.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.
Query SS confidence																			.	.	.	.
Query Sequence		G	F	Q	K	V	F	I	A	L	H	G	R	G	G	E	D	G	.	.	.	.	T	L	Q	G	M	L	E	L	M	G	L	P	Y	T	G	S	G	V	M	A	S	A	L	S	M	D	K	L	R	S	K	L	L	W	Q	G	A	G	L	P	V	A	P	W	V	A	L	T	R	A	E	F	E	K	G	L	S	D	K
Query Conservation																			.	.	.	.
Alig confidence																			.	.	.	.															.
Template Conservation																																					.
Template Sequence		R	P	D	F	V	L	I	R	Q	H	A	F	G	M	A	E	N	E	D	F	R	H	L	V	I	G	M	Q	Y	A	G	L	P	S	I	.	N	S	L	E	S	I	Y	N	F	C	D	K	P	W	V	F	A	Q	M	V	A	I	F	K	T	L	G	G	E	K	F	P	L	I	E	Q	T	Y	Y	P	N	H	R	E
Template Known Secondary structure				S						S					S	S	T	T													T	T					.	S								T	S	S																	T	T	T	S		B							S	S	G	G	G
Template Predicted Secondary structure																																					.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		Q	L	A	E	I	S	A	L	G	L	P	V	I	V	K	P	S	R	E	G	S	S	V	G	M	S	K	V	V	A	E	N	A	L	Q	D	A	L	R	L	A	F	Q	H	D	E	E	V	L	I	E	K	W	L	S	.	G	P	E	F	T	V	A	I	L	G	E	E	I	L	P	S	I	R	I	Q	P	S	G	T
Query Conservation																																																									.
Alig confidence		.	.	.																																																					.
Template Conservation		.	.	.
Template Sequence		.	.	.	M	L	T	L	P	T	F	P	V	V	V	K	I	G	H	A	H	S	G	M	G	K	V	K	V	E	N	H	Y	D	F	Q	D	I	A	S	V	V	A	L	T	Q	T	Y	A	T	A	E	P	F	I	D	A	K	Y	D	I	R	V	Q	K	I	G	N	N	Y	K	A	Y	M	R	T	S	I	S	G	N
Template Known Secondary structure		.	.	.	G	S	S				S	S						S	S		S	T	T	T	T						S															T																					T	T									S	S		T	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Y	D	Y	E	A	K	Y	L	S	D	E	T	Q	Y	F	C	P	A	G	L	E	A	S	Q	E	A	N	L	Q	A	L	V	L	K	A	W	T	T	L	G	C	K	G	W	G	R	I	D	V	M	L	D	S	D	G	Q	F	Y	L	L	E	A	N	T	S	P	G	M	T	S	H	S	L	V	P	M	A	A	R
Query Conservation
Alig confidence		.	.	.																	.	.	.	.	.	.	.																																										.	.	.	.
Template Conservation		.	.	.																	.	.	.	.	.	.	.																																										.	.	.	.
Template Sequence		.	.	.	W	K	T	N	T	G	S	A	M	L	E	Q	I	A	M	S	.	.	.	.	.	.	.	D	R	Y	K	L	W	V	D	A	C	S	E	M	F	G	G	L	D	I	C	A	V	K	A	V	H	G	K	D	G	K	D	Y	I	F	E	V	M	D	C	S	.	.	.	.	M	P	L	I	G	E	H	Q	V
Template Known Secondary structure		.	.	.	T	S		S				S	S								.	.	.	.	.	.	.											T	T	G	G	G			S										T	T	S										T	T	.	.	.	.					S	S
Template Predicted Secondary structure		.	.	.																	.	.	.	.	.	.	.																																										.	.	.	.
Template SS confidence
					336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.								.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.					.	.	.	.	.	.	.	400	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	G	M	S	F	S	Q	L	V	V	R	I	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	D	R	Q	L	I	T	D	L	V	I	S	K	M	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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