Return to main results Retrieve Phyre Job Id

Job DescriptionP00893
Confidence100.00%DateThu Jan 5 10:57:03 GMT 2012
Rank24Aligned Residues181
% Identity46%Templated1ybha2
SCOP infoThiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Pyruvate oxidase and decarboxylase Pyr module
Resolution2.50

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
Predicted Secondary structure 























Query SS confidence 















































































Query Sequence  MEMLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARATGEVGVVLVTSGPGAT
Query Conservation 
   


  
   
   

  


 

     
   
     
  
    
  
   
 


   
   
   
 


  
Alig confidence 















































































Template Conservation      

 
 
   
   

  


 

     

  
     
  
    
  
   
 



 

   
     


  
Template Sequence  DQPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGAT
Template Known Secondary structure  T

TTT




GGG
SS



SSSS

TT
Template Predicted Secondary structure 



























Template SS confidence 















































































   94.....100.........110.........120.........130.........140.........150.........160.........170...
 
   81........90.........100.........110.........120.........130.........140.........150.........160
Predicted Secondary structure 


























Query SS confidence 















































































Query Sequence  NAITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVD
Query Conservation 
    
  
     


 
 
  
    
    
  
         
    
         
  
   
     


 
 
Alig confidence 















































































Template Conservation 
    
  
     


 
 
       
    
  
        

    
         
  
   
     


 
 
Template Sequence  NLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVD
Template Known Secondary structure  TTT



GGGTTTT
TT


GGGSS


GGGSSS

Template Predicted Secondary structure 



























Template SS confidence 















































































   174.....180.........190.........200.........210.........220.........230.........240.........250...
 
   161........170.........180.
Predicted Secondary structure 
















Query SS confidence 




















Query Sequence  LPKDILNPANKLPYVWPESVS
Query Conservation 

 

                
Alig confidence 




















Template Conservation 

 
                
Template Sequence  VPKDIQQQLAIPNWEQAMRLP
Template Known Secondary structure 



TT




Template Predicted Secondary structure 














Template SS confidence 




















   254.....260.........270....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions