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Job DescriptionP00893
Confidence100.00%DateThu Jan 5 10:57:03 GMT 2012
Rank22Aligned Residues497
% Identity20%Templatec3lq1A_
PDB info PDB header:transferaseChain: A: PDB Molecule:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- PDBTitle: crystal structure of 2-succinyl-6-hydroxy-2,4-cyclohexadiene2 1-carboxylic acid synthase/2-oxoglutarate decarboxylase3 from listeria monocytogenes str. 4b f2365
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
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Query Sequence  MLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARATGEVGVVLVTSGPGATNA
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Template Sequence  LTDYLAAFIEELVQAGVKEAIISPGSRSTPLALMMAEHPILKIYVDVDERSAGFFALGLAKASKRPVVLLCTSGTAAANY
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TTT
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   8.10.........20.........30.........40.........50.........60.........70.........80.......
 
   83......90.........100.........110.........120.........130.........140... ......150.....
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Query Sequence  ITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVGISRPVVKHSFLVKQTEDIPQVLK. . . . . . . KAFWLAASGRPG
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Template Sequence  FPAVAEANLSQIPLIVLTADRPHELRNVGAPQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRG
Template Known Secondary structure  TT



GGGTTSS
TT



TTTTGGGSS





SSSS

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   88.90.........100.........110.........120.........130.........140.........150.........160.......
 
   156...160.........170.........180.........190.........200.........210.........220.........230.....
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Query Sequence  PVVVDLPKDILNPANKLPYVWPESVSMRSYNPTTTGHKGQIKRALQTLVAAKKPVVYVGGGAITAGCHQQLKETVEALNL
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Template Sequence  PVHLNFPLREPLVPI. . . . . . . . LEPSPFYYTHEVLDDSSIQKMVTEC. TGKKGVFVVG. PIDKKELEQPMVDLAKKLGW
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   168.170.........180.. .......190.........200....... ..210....... ..220.........230.......
 
   236...240. ........250.........260.........270.........280.........290.........300.........310....
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Query Sequence  PVVCSL. MGLGAFPATHRQALGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATVLHIDIDPTSISKTV
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Template Sequence  PILADPLSGLRSYGALDEVVIDQYDAFLKEAEIIDKLTPEVVIRFGSMPVSKPLKNWLEQLSDIRFYVVDPGAAWKDPIK
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GGGSTTSBSS

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TTST

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TT
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   250.........260.........270.........280.........290.........300.........310.........320.........
 
   315....320.........330.........340.. .......350.........360.........370.........380.........390...
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Query Sequence  TADIPIVGDARQVLEQMLELLSQESAHQ. PLDEIRDWWQQIEQWRARQCLKYDTHSEKIKPQAVIETLWRLTKGDAYVTS
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Template Sequence  AVTDMIHCDERFLLDIMQQNMPDDAKDAAWLNGWTSYNKVAREIVLAEMA. . . . . . . . NEEGKIVAELRRLLPDKAGLFI
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   330.........340.........350.........360.........370......... 380.........390.........400.
 
   394..... 400.........410.........420.........430.........440.........450.........460.........470..
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Query Sequence  DVGQHQ. MFAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVLVVN
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Template Sequence  GNSMPIRDVDTYFSQIDKKIKMLANRGANGIDGVVSSALGASV. . VFQPMFLLIGDLSFYHDMNGLLMAKKYKMNLTIVI
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   406...410.........420.........430.........440........ .450.........460.........470.........480...
 
   473......480.........490.........500.........510.........520.........530.........540......
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Query Sequence  LNNRYLGMVKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQISHPHELESKLSEALEQVRNNRLVFVDVT
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Template Sequence  VNNDEL. . . . . . . . . . . . . . . . . . . . . . . . DFRFAAAFYDADYHEAKSVDELEEAIDKASY. . . HKGLDIIEVK
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   484..... 490.........500.........510.........520 .........530
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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