Job Description P00893 Confidence 100.00% Date Thu Jan 5 10:57:03 GMT 2012 Rank 16 Aligned Residues 538 % Identity 16% Template c2x7jA_ PDB info PDB header:transferase Chain: A: PDB Molecule:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene PDBTitle: structure of the menaquinone biosynthesis protein mend from2 bacillus subtilis Resolution 2.35 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	A	E	M	V	V	R	S	L	I	D	Q	G	V	K	Q	V	F	G	Y	P	G	G	A	V	L	D	I	Y	D	A	L	H	T	V	G	G	I	D	H	V	L	V	R	H	E	Q	A	A	V	H	M	A	D	G	L	A	R	A	T	G	E	V	G	V	V	L	V	T	S	G	P	G	A	T	N	A	I	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	Y	I	G	S	F	I	D	E	F	A	L	S	G	I	T	D	A	V	V	C	P	G	S	R	S	T	P	L	A	V	L	C	A	A	H	P	D	I	S	V	H	V	Q	I	D	E	R	S	A	G	F	F	A	L	G	L	A	K	A	K	Q	R	P	V	L	L	I	C	T	S	G	T	A	A	A	N	F	Y	P
Template Known Secondary structure															T										S	T	T											T	T							S	S																T	S								S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.								140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.
Query Sequence		G	I	A	T	A	Y	M	D	S	I	P	L	V	V	L	S	G	Q	V	A	T	S	L	I	G	Y	D	A	F	Q	E	C	D	M	V	G	I	S	R	P	V	V	K	H	S	F	L	V	K	Q	T	E	D	I	P	.	.	.	.	.	.	.	Q	V	L	K	K	A	F	W	L	A	A	S	G	R	P	G	P	V
Query Conservation																																																									.	.	.	.	.	.	.
Alig confidence																																																									.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	V	V	E	A	H	Y	S	R	V	P	I	I	V	L	T	A	D	R	P	H	E	L	R	E	V	G	A	P	Q	A	I	N	Q	H	F	L	F	G	N	F	V	K	F	F	T	D	S	A	L	P	E	E	S	P	Q	M	L	R	Y	I	R	T	L	A	S	R	A	A	G	E	A	Q	K	R	P	M	G	P	V
Template Known Secondary structure										T												G	G	G	S	S	S			T	T					T	T	T	T	G	G	G	S	S											S																				S	S	S
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180				.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																									.	.	.
Query SS confidence																									.	.	.
Query Sequence		V	V	D	L	P	K	D	I	L	N	P	A	N	K	L	P	Y	V	W	P	E	S	V	.	.	.	S	M	R	S	Y	N	P	T	T	T	G	H	K	G	Q	I	K	R	A	L	Q	T	L	V	A	A	K	K	P	V	V	Y	V	G	G	G	A	I	T	A	G	C	H	Q	Q	L	K	E	T	V	E	A	L	N
Query Conservation																									.	.	.
Alig confidence																									.	.	.																																											.
Template Conservation																																																																						.
Template Sequence		H	V	N	V	P	L	R	E	P	L	M	P	D	L	S	D	E	P	F	G	R	M	R	T	G	R	H	V	S	V	K	T	G	T	Q	S	V	D	R	E	S	L	S	D	V	A	E	M	L	A	E	A	E	K	G	M	I	V	C	G	E	L	H	S	D	A	D	K	.	E	N	I	I	A	L	S	K	A	L	Q
Template Known Secondary structure									S						T	T	S		T	T			S	S	S	S		S	S											T	G	G	G											S	S															.											T
Template Predicted Secondary structure																																																																						.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.		.	.	.	.	240	.	.	.	.	.	.
		235	.	.	.	.	240	.	.	.		.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		L	P	V	V	C	S	L	M	G	.	L	G	A	F	P	A	T	H	R	Q	A	L	G	M	L	G	M	H	G	T	Y	E	A	N	M	T	M	H	N	A	D	V	I	F	A	V	G	V	R	F	D	D	R	T	T	N	N	L	A	K	Y	C	P	N	A	T	V	L	H	I	D	I	D	P	T	S	I	S	K	T
Query Conservation											.
Alig confidence											.
Template Conservation
Template Sequence		Y	P	I	L	A	D	P	L	S	N	L	R	N	G	V	H	D	K	S	T	V	I	D	A	Y	D	S	F	L	K	D	D	E	L	K	R	K	L	R	P	D	V	V	I	R	F	G	P	M	P	V	S	K	P	V	F	L	W	L	K	D	D	P	T	I	Q	Q	I	V	I	D	E	D	G	G	W	R	D	P	T
Template Known Secondary structure								G	G	G	T	T	T	B	S	S	S			T	T									T	T	S										S						S	S			S												T	T	S							T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	A	D	I	P	I	V	G	D	A	R	Q	V	L	E	Q	M	L	E	L	L	S	Q	E	S	A	H	Q	P	L	D	E	I	R	D	W	W	Q	Q	I	E	Q	W	R	A	R	Q	C	L	K	Y	D	T	H	S	E	K	I	K	P	Q	A	V	I	E	T	L	W	R	L	T	K	G	D	A	Y	V	T	S
Query Conservation
Alig confidence																															.	.																										.	.
Template Conservation																															.	.																										.	.
Template Sequence		Q	A	S	A	H	M	I	H	C	N	A	S	V	F	A	E	E	I	M	A	G	L	T	A	A	T	R	S	S	.	.	E	W	L	E	K	W	Q	F	V	N	G	R	F	R	E	H	L	Q	T	I	S	S	E	D	V	.	.	S	F	E	G	N	L	Y	R	I	L	Q	H	L	V	P	E	N	S	S	L	F	V
Template Known Secondary structure		S			S					S												T	S		S	S					.	.																			T	S					T	.	.	T	S												S		T	T
Template Predicted Secondary structure																															.	.																										.	.
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.			.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380			.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.		.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		D	V	G	Q	H	Q	M	F	A	A	L	Y	Y	P	F	D	K	P	R	.	R	W	I	N	S	G	G	L	G	T	M	G	F	G	L	P	A	A	L	G	V	K	M	A	L	P	E	E	T	V	V	C	V	T	G	D	G	S	I	Q	M	N	I	Q	E	L	S	T	A	L	Q	Y	E	L	P	V	L	V	V	N
Query Conservation																					.
Alig confidence																					.																									.
Template Conservation																																														.
Template Sequence		G	N	S	M	P	I	R	D	V	D	T	F	F	E	K	Q	D	R	P	F	R	I	Y	S	N	R	G	A	N	G	I	D	G	V	V	S	S	A	M	G	V	C	E	G	.	T	K	A	P	V	T	L	V	I	G	D	L	S	F	Y	H	D	L	N	G	L	L	A	A	K	K	L	G	I	P	L	T	V	I	L
Template Known Secondary structure			T	T													B	S									T	T	T			S	S	S												.		T	S														T	G	G	G	G
Template Predicted Secondary structure																																														.
Template SS confidence
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.		.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
		473	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.		.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		L	N	N	R	Y	L	G	M	V	K	Q	W	Q	D	M	I	Y	S	G	.	R	H	S	Q	S	Y	M	Q	S	L	P	D	F	V	R	L	A	E	A	Y	G	H	V	G	I	Q	I	S	H	P	H	E	L	E	S	K	L	S	E	A	L	E	Q	V	R	N	N	R	L	V	F	V	D	V	T	V	D	G	S	E
Query Conservation																					.
Alig confidence																					.																																											.	.	.
Template Conservation																																																																.	.	.
Template Sequence		V	N	N	D	G	G	G	I	F	S	F	L	P	Q	A	S	E	K	T	H	F	E	D	L	F	G	T	P	T	G	L	D	F	K	H	A	A	A	L	Y	G	G	T	Y	S	C	P	A	S	W	D	E	F	K	T	A	Y	A	P	Q	A	D	.	.	.	K	P	G	L	H	L	I	E	I	K	T	D	R	Q	S
Template Known Secondary structure					S	S		G	G	G	G	G	S	G	G	G	S									T	T							T							T	T							S	S													S	.	.	.	S
Template Predicted Secondary structure																																																																.	.	.
Template SS confidence
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.				.	.	.	.	.	.	550	.	.	.	.	.	.	.	.