Return to main results Retrieve Phyre Job Id

Job DescriptionP00893
Confidence100.00%DateThu Jan 5 10:57:03 GMT 2012
Rank17Aligned Residues540
% Identity19%Templatec2vbiF_
PDB info PDB header:lyaseChain: F: PDB Molecule:pyruvate decarboxylase; PDBTitle: holostructure of pyruvate decarboxylase from acetobacter2 pasteurianus
Resolution2.75 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
Predicted Secondary structure 





















Query SS confidence 















































































Query Sequence  MLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARATGEVGVVLVTSGPGATNA
Query Conservation    


  
   
   

  


 

     
   
     
  
    
  
   
 


   
   
   
 


  
 
Alig confidence 
































































.













Template Conservation    
  
 
   
   

  


 

     
  

     
  
    
  
   
 



  
 .  
  


 
  
 
Template Sequence  TYTVGMYLAERLVQIGLKHHFAVAGDYNLVLLDQLLLNKDMKQIYCCNELNCGFSAEGYARSNGA. AAAVVTFSVGAISA
Template Known Secondary structure 

BT
S


TTTT
TTS
SSS
.
TTTT
Template Predicted Secondary structure 






















.

Template SS confidence 















































































   2.......10.........20.........30.........40.........50.........60...... ...70.........80
 
   83......90.........100.........110..... ....120.........130.........140.........150....
Predicted Secondary structure 















........









Query SS confidence 
































. . . . . . . .






































Query Sequence  ITGIATAYMDSIPLVVLSGQVATSLIGYDAFQE. . . . . . . . CDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRP
Query Conservation     
  
     


 
 
  
    
    
 ........ 
         
    
         
  
   
     
Alig confidence 
































........





































.
Template Conservation     
  
     


 
 
            
                    
    
         
  
   
    .
Template Sequence  MNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRER.
Template Known Secondary structure  TT



GGGTTTT


TTS
SSS

TTT
S
SSSST.
Template Predicted Secondary structure 































.
Template SS confidence 















































































   81........90.........100.........110.........120.........130.........140.........150.........
 
   155....160.........170.........180.........190.........200.........210.........220.........230....
Predicted Secondary structure 







































Query SS confidence 















































































Query Sequence  GPVVVDLPKDILNPANKLPYVWPESVSMRSYNPTTTGHKGQIKRALQTLVAAKKPVVYVGGGAITAGCHQQLKETVEALN
Query Conservation 


 
 

 

                              
      
  
 




 
 
         
  


 
 
Alig confidence 

































..











































Template Conservation 


 
 

 

                       ..     
      
  





 

 
     
   
  


 
 
Template Sequence  KPAYLDIACNIASEPCVRPGPVSSLLSEPEIDHT. . SLKAAVDATVALLEKSASPVMLLGSKLRAANALAATETLADKLQ
Template Known Secondary structure 

TTTTTSB






S
S






..T
S

TTTTTTT

Template Predicted Secondary structure 

























..













Template SS confidence 















































































   160.........170.........180.........190... ......200.........210.........220.........230.......
 
   235....240.........250........ .260.........270.........280.........290.........300.........310...
Predicted Secondary structure 




















.
































Query SS confidence 























.






















































Query Sequence  LPVVCSLMGLGAFPATHRQALGML. GMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATVLHIDIDPTSISKT
Query Conservation   

              
   
  .
          
  

 

 

  
                 
 
  
       
Alig confidence 























.






















































Template Conservation   

 

    
      
   
   
          
   
 

 

                    
 
  
       
Template Sequence  CAVTIMAAAKGFFPEDHAGFRGLYWGEVSNPGVQELVETSDALLCIAPVFNDYSTVGWSAWPKGPNVILAEPDRVTVDGR
Template Known Secondary structure 
GGGTTSS
TTSTT
GGGS
TTT
SS



TTTTTTTTS


STT
SSTT
Template Predicted Secondary structure 























































Template SS confidence 















































































   238.240.........250.........260.........270.........280.........290.........300.........310.......
 
   314.....320.........330.........340.........350.........360.........370.........380.........390...
Predicted Secondary structure 



























Query SS confidence 















































































Query Sequence  VTADIPIVGDARQVLEQMLELLSQESAHQPLDEIRDWWQQIEQWRARQCLKYDTHSEKIKPQAVIETLWRLTKGDAYVTS
Query Conservation        
  
    
  
   
                                             
        


 
Alig confidence 




....

















...........









































Template Conservation       .... 
   
  
         ...........                             
        
   
Template Sequence  AYDGF. . . . TLRAFLQALAEKAPARPA. . . . . . . . . . . SAQKSSVPTCSLTATSDEAGLTNDEIVRHINALLTSNTTLVA
Template Known Secondary structure  SS....





...........TS










TTS




TT
Template Predicted Secondary structure 




....






...........

















Template SS confidence 















































































   318.320.. .......330.........340 .........350.........360.........370.........380..
 
   394.....400.........410.........420.........430.........440.........450.........460.........470...
Predicted Secondary structure 


























Query SS confidence 















































































Query Sequence  DVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVLVVNL
Query Conservation 
 
                        
 

  
  


 


     

 
 




     

 

    


 


 
Alig confidence 












.

































































Template Conservation 
 
          .             
 

  
  




 
     

 
 




     

 

      
 


 
Template Sequence  ETGDSWFNAMRMT. LPRGARVELEMQWGHIGWSVPSAFGNAMGSQDRQHVVMVGDGSFQLTAQEVAQMVRYELPVIIFLI
Template Known Secondary structure 
SST

.

TT


TTT

TTTT
TTSGGGTT


Template Predicted Secondary structure 




.






















Template SS confidence 















































































   383......390..... ....400.........410.........420.........430.........440.........450.........460.
 
   474.....480.........490.........500.........510.... .....520.........530.........540........
Predicted Secondary structure 
























.....









Query SS confidence 








































. . . . .

































Query Sequence  NNRYLGMVKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHV. . . . . GIQISHPHELESKLSEALEQVRNNRLVFVDVTVD
Query Conservation 

                           
   

 
 
  .....   
    

  

  
        
 



 
 
Alig confidence 















.......

















.....



















..











Template Conservation 

 
            .......      
   

 
 
          
    

  

  
   ..  

 



 

Template Sequence  NNRGYVIEIAIHDGPY. . . . . . . NYIKNWDYAGLMEVFNAGEGHGLGLKATTPKELTEAIARAKAN. . TRGPTLIECQID
Template Known Secondary structure 
SS
TTS

GG.......G





TTTTTT



S
..
SS


Template Predicted Secondary structure 






.......

















..





Template SS confidence 















































































   462.......470....... ..480.........490.........500.........510.........520 .........530..
 
   549550.........560.........570.
Predicted Secondary structure 



















Query SS confidence 






















Query Sequence  GSEHVYPMQIRGGGMDEMWLSKT
Query Conservation        
                
Alig confidence 






















Template Conservation         
          
    
Template Sequence  RTDCTDMLVQWGRKVASTNARKT
Template Known Secondary structure  TT


T


Template Predicted Secondary structure 






Template SS confidence 






















   533......540.........550.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions