Job Description P00893 Confidence 100.00% Date Thu Jan 5 10:57:03 GMT 2012 Rank 18 Aligned Residues 510 % Identity 24% Template c2vbgB_ PDB info PDB header:lyase Chain: B: PDB Molecule:branched-chain alpha-ketoacid decarboxylase; PDBTitle: the complex structure of the branched-chain keto acid2 decarboxylase (kdca) from lactococcus lactis with 2r-1-3 hydroxyethyl-deazathdp Resolution 1.80 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	S	G	A	E	M	V	V	R	S	L	I	D	Q	G	V	K	Q	V	F	G	Y	P	G	G	A	V	L	D	I	Y	D	A	L	H	T	V	G	G	I	D	H	V	L	V	R	H	E	Q	A	A	V	H	M	A	D	G	L	A	R	A	T	G	E	V	G	V	V	L	V	T	S	G	P	G	A	T	N	A
Query Conservation
Alig confidence																																																															.
Template Conservation																																																															.
Template Sequence		M	Y	T	V	G	D	Y	L	L	D	R	L	H	E	L	G	I	E	E	I	F	G	V	P	G	D	Y	N	L	Q	F	L	D	Q	I	I	S	R	E	D	M	K	W	I	G	N	A	N	E	L	N	A	S	Y	M	A	D	G	Y	A	R	.	T	K	K	A	A	A	F	L	T	T	F	G	V	G	E	L	S	A
Template Known Secondary structure				B												T	T										G	G	G											S	S							S	S														.			S								T	T
Template Predicted Secondary structure																																																															.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.									.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.
Query Sequence		I	T	G	I	A	T	A	Y	M	D	S	I	P	L	V	V	L	S	G	Q	V	A	T	S	L	I	G	Y	D	A	F	Q	E	C	.	.	.	.	.	.	.	.	D	M	V	G	I	S	R	P	V	V	K	H	S	F	L	V	K	Q	T	E	D	I	P	Q	V	L	K	K	A	F	W	L	A	A	S	G	R	P
Query Conservation																																				.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.																		.																				.
Template Conservation																																																													.																				.
Template Sequence		I	N	G	L	A	G	S	Y	A	E	N	L	P	V	V	E	I	V	G	S	P	T	S	K	V	Q	N	D	G	K	F	V	H	H	T	L	A	D	G	D	F	K	H	F	M	K	M	H	E	P	V	T	A	A	R	T	L	L	T	.	A	E	N	A	T	Y	E	I	D	R	V	L	S	Q	L	L	K	E	R	.
Template Known Secondary structure											T	T																	T	T				T	T	S		S	S	S									T	G	G	G		S							.	T	T	T																	.
Template Predicted Secondary structure																																																													.																				.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	V	V	V	D	L	P	K	D	I	L	N	P	A	N	K	L	P	Y	V	W	P	E	S	V	S	M	R	S	Y	N	P	T	T	T	G	H	K	G	Q	I	K	R	A	L	Q	T	L	V	A	A	K	K	P	V	V	Y	V	G	G	G	A	I	T	A	G	C	H	Q	Q	L	K	E	T	V	E	A	L	N
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.
Template Sequence		K	P	V	Y	I	N	L	P	V	D	V	A	A	A	K	A	E	K	P	A	L	S	L	E	N	T	.	.	.	.	.	.	.	.	.	.	T	E	Q	V	I	L	S	K	I	E	E	S	L	K	N	A	Q	K	P	V	V	I	A	G	H	E	V	I	S	F	G	L	E	K	T	V	T	Q	F	V	S	E	T	K
Template Known Secondary structure														T	S	B					S	S						.	.	.	.	.	.	.	.	.	.																	S	S												T	T													T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.											.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		L	P	V	V	C	S	L	M	G	L	G	A	F	P	A	T	H	R	Q	A	L	G	M	L	.	G	M	H	G	T	Y	E	A	N	M	T	M	H	N	A	D	V	I	F	A	V	G	V	R	F	D	D	R	T	T	N	N	L	A	K	Y	C	P	N	A	T	V	L	H	I	D	I	D	P	T	S	I	S	K	T
Query Conservation																										.
Alig confidence																										.
Template Conservation
Template Sequence		L	P	I	T	T	L	N	F	G	K	S	A	V	D	E	S	L	P	S	F	L	G	I	Y	N	G	K	L	S	E	I	S	L	K	N	F	V	E	S	A	D	F	I	L	M	L	G	V	K	L	T	D	S	S	T	G	A	F	T	H	H	L	D	E	N	K	M	I	S	L	N	I	D	E	G	I	I	F	N	K
Template Known Secondary structure								S	T	T	T	T	S	S		T	T	S	T	T							G	G	G	S												S						S					G	G	G	T	T	T	T						G	G	G						S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	A	D	I	P	I	V	G	D	A	R	Q	V	L	E	Q	M	L	E	L	L	S	Q	E	S	A	H	Q	P	L	D	E	I	R	D	W	W	Q	Q	I	E	Q	W	R	A	R	Q	C	L	K	Y	D	T	H	S	E	K	I	K	P	Q	A	V	I	E	T	L	W	R	L	T	K	G	D	A	Y	V	T	S
Query Conservation
Alig confidence							.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	V	E	D	F	.	.	.	.	D	F	R	A	V	V	S	S	L	S	E	L	K	G	I	E	Y	E	G	Q	Y	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	K	E	E	F	I	P	S	S	A	P	L	S	Q	D	R	L	W	Q	A	V	E	S	L	T	Q	S	N	E	T	I	V	A
Template Known Secondary structure					S	S	.	.	.	.							T	T	G	G	G			S					S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S	S	B																S	S
Template Predicted Secondary structure							.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		314	.	.	.	.					.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340																	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	G	Q	H	Q	M	F	A	A	L	Y	Y	P	F	D	K	P	R	R	W	I	N	S	G	G	L	G	T	M	G	F	G	L	P	A	A	L	G	V	K	M	A	L	P	E	E	T	V	V	C	V	T	G	D	G	S	I	Q	M	N	I	Q	E	L	S	T	A	L	Q	Y	E	L	P	V	L	V	V	N	L
Query Conservation
Alig confidence															.
Template Conservation															.
Template Sequence		E	Q	G	T	S	F	F	G	A	S	T	I	F	.	L	K	S	N	S	R	F	I	G	Q	P	L	W	G	S	I	G	Y	T	F	P	A	A	L	G	S	Q	I	A	D	K	E	S	R	H	L	L	F	I	G	D	G	S	L	Q	L	T	V	Q	E	L	G	L	S	I	R	E	K	L	N	P	I	C	F	I	I
Template Known Secondary structure			T	T							T	T	S		.			T	T							T	T	T			T	T	T													T	T	S															G	G	G							T	T
Template Predicted Secondary structure															.
Template SS confidence
		376	.	.	.	380	.	.	.	.	.	.	.	.		.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.						.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.
Query SS confidence																																														.	.	.	.	.
Query Sequence		N	N	R	Y	L	G	M	V	K	Q	W	Q	D	M	I	Y	S	G	R	H	S	Q	S	Y	M	Q	S	L	P	D	F	V	R	L	A	E	A	Y	G	H	V	G	I	Q	.	.	.	.	.	I	S	H	P	H	E	L	E	S	K	L	S	E	A	L	E	Q	V	R	N	N	R	L	V	F	V	D	V	T	V	D
Query Conservation																																														.	.	.	.	.
Alig confidence														.	.	.	.	.																												.	.	.	.	.																		.	.
Template Conservation														.	.	.	.	.																																																		.	.
Template Sequence		N	N	D	G	Y	T	V	E	R	E	I	H	.	.	.	.	.	G	P	T	Q	S	Y	N	D	I	P	M	W	N	Y	S	K	L	P	E	T	F	G	A	T	E	D	R	V	V	S	K	I	V	R	T	E	N	E	F	V	S	V	M	K	E	A	Q	A	D	.	.	V	N	R	M	Y	W	I	E	L	V	L	E
Template Known Secondary structure			S	S	S								S	.	.	.	.	.		T	T		G	G	G							G	G	G					T	T			T	T	T								B															.	.	T	T	S
Template Predicted Secondary structure														.	.	.	.	.																																																		.	.
Template SS confidence
		455	.	.	.	.	460	.	.	.	.	.	.						.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.			.	.	.	.	520	.	.	.	.	.	.	.
		549	550	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	E	H	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	E	D	A	P
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		528	.	530	.	.