Job Description P00893 Confidence 97.83% Date Thu Jan 5 10:57:03 GMT 2012 Rank 93 Aligned Residues 253 % Identity 13% Template c2bp7F_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:2-oxoisovalerate dehydrogenase beta subunit; PDBTitle: new crystal form of the pseudomonas putida branched-chain2 dehydrogenase (e1) Resolution 2.9 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.				.	.	.	20	.	.	.	.						.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																	.	.	.									.	.	.	.	.																	.
Query SS confidence																	.	.	.									.	.	.	.	.																	.
Query Sequence		E	M	L	S	G	A	E	M	V	V	R	S	L	I	D	.	.	.	Q	G	V	K	Q	V	F	G	.	.	.	.	.	Y	P	G	G	A	V	L	D	I	Y	D	A	L	H	T	V	.	G	G	I	D	H	V	L	V	R	H	E	Q	A	A	V	H	M	A	D	G	L	A	R	A	T	G	E	V	G	V	V	L
Query Conservation																	.	.	.									.	.	.	.	.																	.
Alig confidence																	.	.	.									.	.	.	.	.																	.																													.
Template Conservation																																																																														.
Template Sequence		T	T	M	T	M	I	Q	A	L	R	S	A	M	D	V	M	L	E	R	D	D	N	V	V	V	Y	G	Q	D	V	G	Y	F	G	G	V	F	R	C	T	E	G	L	Q	T	K	Y	G	K	S	R	V	F	D	A	P	I	S	E	S	G	I	V	G	T	A	V	G	M	G	A	Y	G	L	R	P	.	V	V	E
Template Known Secondary structure																						T	T						T	T		S	S	S			T	T	S	T	T	T	T							T	T	T						S																T				.
Template Predicted Secondary structure																																																																														.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.										.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.																																			.
Query SS confidence																					.	.	.	.	.	.	.	.	.																																			.
Query Sequence		V	T	S	G	P	G	A	T	N	A	I	T	G	I	A	T	A	Y	M	.	.	.	.	.	.	.	.	.	D	S	I	P	L	V	V	L	S	G	Q	V	A	T	S	L	I	G	Y	D	A	F	Q	E	C	D	M	V	G	I	S	R	P	V	.	V	K	H	S	F	L	V	K	Q	T	E	D	I	P	Q	V	L
Query Conservation																					.	.	.	.	.	.	.	.	.																																			.
Alig confidence																					.	.	.	.	.	.	.	.	.														.	.																				.
Template Conservation																																											.	.
Template Sequence		I	Q	F	A	D	Y	F	Y	P	A	S	D	Q	I	V	S	E	M	A	R	L	R	Y	R	S	A	G	E	F	I	A	P	L	T	L	R	M	P	C	G	G	.	.	G	I	Y	G	G	Q	T	H	S	Q	S	P	E	A	M	F	T	Q	V	C	G	L	R	T	V	M	P	S	N	P	Y	D	A	K	G	L	L
Template Known Secondary structure			S		G	G	G		G	G	G						T	T	T	T	T					T	T	T	S	S													.	.	S	S	S			T	T	S	S				T					T	S	T	T								S
Template Predicted Secondary structure																																											.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	A	F	W	L	A	A	S	G	R	P	G	P	V	V	V	D	L	P	K	D	I	L	N	P	A	N	K	L	P	Y	V	W	P	E	S	V	S	M	R	S	Y	N	P	T	T	T	G	H	K	G	Q	I	K	R	A	L	Q	T	L	V	A	A	K	K	P	V	V	Y	V	G	G	G	A	I	T	A	G	C
Query Conservation
Alig confidence							.	.	.	.	.
Template Conservation							.	.	.	.	.
Template Sequence		I	A	S	I	E	.	.	.	.	.	C	D	D	P	V	I	F	L	E	P	K	R	L	Y	N	G	P	F	D	G	H	H	D	R	P	V	T	P	W	S	K	H	P	H	S	A	V	P	D	G	Y	Y	T	V	P	L	D	K	A	A	I	T	R	P	G	N	D	V	S	V	L	T	Y	G	T	T	V	Y	V	A
Template Known Secondary structure							.	.	.	.	.		S	S								G	G	G	S	S	S				S		S	S	S					G	G	G	S	T	T					S	S						T	T									S	S							T	T
Template Predicted Secondary structure							.	.	.	.	.
Template SS confidence
		161	.	.	.	.						.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Q	Q	L	K	E	T	V	E	A	L	N	L	P	V	V	C	S	L	M	G	L	G	A	F	P	A	T	H	R	Q	A	L	G	M	L	G	M	H	G	T	Y	E	A	N	M	T	M	H	N	A	D	V	I	F	A	V
Query Conservation
Alig confidence					.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	V	A	.	.	.	.	A	E	E	S	G	V	D	A	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	L	R	S	L	W	P	L	D	L	D	T	I	V	E	S	V	K	K	T	G	R	C	V	V	V
Template Known Secondary structure					.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.				S				S														S
Template Predicted Secondary structure					.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		236	.	.					.	240	.	.	.	.	.	.	.	.														.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions