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Job DescriptionP00893
Confidence100.00%DateThu Jan 5 10:57:03 GMT 2012
Rank11Aligned Residues549
% Identity26%Templatec2ag1A_
PDB info PDB header:lyaseChain: A: PDB Molecule:benzaldehyde lyase; PDBTitle: crystal structure of benzaldehyde lyase (bal)- semet
Resolution2.58 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
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Query Sequence  MLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARATGEVGVVLVTSGPGATNA
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Template Sequence  XITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDH. DVPIIDTRHEAAAGHAAEGYARAGAKLGVALVTAGGGFTNA
Template Known Secondary structure 
T





GGG.T


SSTS

TTT
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   3......10.........20.........30.........40 .........50.........60.........70.........80.
 
   83......90.........100.........110..... ....120.........130.........140.........150.........160.
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Query Sequence  ITGIATAYMDSIPLVVLSGQVATSLIGYDAFQE. CDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDL
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Template Sequence  VTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAXAAPITKWAHRVXATEHIPRLVXQAIRAALSAPRGPVLLDL
Template Known Secondary structure  T



STTTTS

TT

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GGG
S


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   82.......90.........100.........110.........120.........130.........140.........150.........160.
 
   162.......170.........180.........190.........200.........210.........220.........230.........240.
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Query Sequence  PKDILNPANKLPYVWPESVSMRSYNPTTTGHKGQIKRALQTLVAAKKPVVYVGGGAITAGCHQQLKETVEALNLPVVCSL
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Template Sequence  PWDILXNQIDEDSVIIPDLVLSAHGAR. . PDPADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVFADY
Template Known Secondary structure 

TTSS







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   162.......170.........180........ .190.........200.........210.........220.........230.........
 
   242.......250.........260.........270.........280.........290... ......300.........310.........320
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Query Sequence  MGLGAFPATHRQALGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAK. YCPNATVLHIDIDPTSISKTVTADIPI
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Template Sequence  EGLSXLSGLPDAXRGGLVQ. NLYSFAKADAAPDLVLXLGARFGLNTGHGSGQLIPHSAQVIQVDPDACELGRLQGIALGI
Template Known Secondary structure  GGGGGGTTS
GGGGG.GGGGGGGGT


SS

SSGGGTTTS
SSS
TTS
SSGGGTTSSS

S
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   240.........250........ .260.........270.........280.........290.........300.........310........
 
   321........330.........340.........350.........360.........370.........380.........390.........400
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Query Sequence  VGDARQVLEQMLELLSQESAHQPLDEIRDWWQQIEQWRARQCLKYDTHSEKIKPQAVIETLWRLTKGDAYVTSDVGQHQM
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Template Sequence  VADVGGTIEALAQATAQDAAWPDRGDWCAKVTDLAQERYASIAAKSSSEHALHPFHASQVIAKHVDAGVTVVADGALTYL
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TT





TT


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TT
STT
ST
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   319320.........330.........340.........350.........360.........370.........380.........390........
 
   401........410.........420.........430...... ...440.........450.........460.........470........
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Query Sequence  FAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMA. . LPEETVVCVTGDGSIQMNIQELSTALQYELPVLVVNLNNRYL
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Template Sequence  WLSEVXSRVKPGGFLCHGYLGSXGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVIIXNNQSW
Template Known Secondary structure  TTS

S


TT

TTTTT
GGGTTTT



SB
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   399400.........410.........420.........430.........440.........450.........460.........470........
 
   479480.........490.........500.........510.........520.........530.........540.........550........
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Query Sequence  GMVKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQISHPHELESKLSEALEQVRNNRLVFVDVTVDGSEHVYPMQI
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Template Sequence  GATLHFQQLAVGPNRVTGTRLENGSYHGVAAAFGADGYHVDSVESFSAALAQALA. . . HNRPACINVAVALDPIPPEELI
Template Known Secondary structure  T
TT


S
B




TTS
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   479480.........490.........500.........510.........520.........530... ......540.........550.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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