Job Description P00893 Confidence 56.91% Date Thu Jan 5 10:57:03 GMT 2012 Rank 174 Aligned Residues 169 % Identity 13% Template c1zq1B_ PDB info PDB header:lyase Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: structure of gatde trna-dependent amidotransferase from2 pyrococcus abyssi Resolution 3.00 Å

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		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.			.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.																	.	130	.	.
Predicted Secondary structure																									.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	L	V	T	S	G	P	G	A	T	N	A	I	T	G	I	A	T	A	Y	M	D	S	.	.	I	P	L	V	V	L	S	G	Q	V	A	T	S	L	I	G	Y	D	A	F	Q	E	C	D	M	V	G	I	S	R	P	V	V	K	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	F	L	V
Query Conservation																									.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	V	V	A	H	G	T	D	T	X	G	Y	T	A	A	A	L	S	F	X	L	R	N	L	G	K	P	V	V	L	V	G	A	Q	R	S	S	D	R	P	S	S	D	A	A	X	N	L	I	C	S	V	R	X	A	T	S	E	V	A	E	V	X	V	V	X	H	G	E	T	G	D	T	Y	C	L	A	H	R	G
Template Known Secondary structure								T	T	T												S	B	T			S								S	S		T	T	S	T	T		S													T	S	S	B		S							S	S	S	S	S	S							T
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.							.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.
Query Sequence		K	Q	T	E	D	I	P	Q	V	L	K	K	A	F	W	L	A	A	S	G	R	P	G	P	V	V	V	D	L	P	K	D	I	L	N	P	A	N	K	L	P	Y	V	W	P	E	S	V	S	M	R	S	Y	N	P	.	.	.	.	.	.	T	T	T	G	H	K	G	Q	I	K	R	A	L	Q	T	L	V	A	A
Query Conservation																																																									.	.	.	.	.	.
Alig confidence																																																									.	.	.	.	.	.														.	.	.
Template Conservation																																																																												.	.	.
Template Sequence		T	K	V	R	K	X	H	T	S	R	R	D	A	F	R	S	I	N	D	V	P	I	A	K	I	W	P	N	G	E	I	E	F	L	R	K	D	Y	R	K	R	S	D	E	E	V	E	V	D	D	K	I	E	E	K	V	A	L	V	K	V	Y	P	G	I	S	S	E	I	I	D	F	L	V	.	.	.	D	K	G
Template Known Secondary structure		T	S					S	S	S		G	G	G				S	S	S			S					T	T	S					S		S		S		B			S				B																S	S			T								.	.	.		T	T
Template Predicted Secondary structure																																																																												.	.	.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.				.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.			220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		K	K	P	V	V	Y	V	G	G	G	A	I	T	.	.	A	G	C	H	Q	Q	L	K	E	T	V	E	A	L	N	L	P	V	V	C	S	L	M	G
Query Conservation															.	.
Alig confidence															.	.														.
Template Conservation																														.
Template Sequence		Y	K	G	I	V	I	E	G	T	G	L	G	H	T	P	N	D	I	I	P	S	I	E	R	A	V	E	E	.	G	V	A	V	C	X	T	S	Q	C
Template Known Secondary structure			S							B	T	T	T	B			T	T	T										T	.	T								S	S
Template Predicted Secondary structure																														.
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.		.	.	.	360	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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