Job Description P00893 Confidence 96.91% Date Thu Jan 5 10:57:03 GMT 2012 Rank 102 Aligned Residues 238 % Identity 14% Template c1um9D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:2-oxo acid dehydrogenase beta subunit; PDBTitle: branched-chain 2-oxo acid dehydrogenase (e1) from thermus2 thermophilus hb8 in apo-form Resolution 2.20 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.				.	.	.	20	.	.	.	.	.	.	.	.	.	30	.									.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																	.	.	.																.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.																.	.	.	.	.	.	.	.
Query Sequence		E	M	L	S	G	A	E	M	V	V	R	S	L	I	D	.	.	.	Q	G	V	K	Q	V	F	G	Y	P	G	G	A	V	L	.	.	.	.	.	.	.	.	D	I	Y	D	A	L	H	T	V	G	G	I	D	H	V	L	V	R	H	E	Q	A	A	V	H	M	A	D	G	L	A	R	A	T	G	E	V	G	V
Query Conservation																	.	.	.																.	.	.	.	.	.	.	.
Alig confidence																	.	.	.																.	.	.	.	.	.	.	.					.	.																																.
Template Conservation																																															.	.																																.
Template Sequence		A	L	M	T	M	V	Q	A	L	N	R	A	L	D	E	E	M	A	K	D	P	R	V	V	V	L	G	E	D	V	G	K	R	G	G	V	F	L	V	T	E	G	L	L	Q	.	.	K	Y	G	P	D	R	V	M	D	T	P	L	S	E	A	A	I	V	G	A	A	L	G	M	A	A	H	G	L	R	P	.	V
Template Known Secondary structure																						T	T						T	T		S	S	S			T	T	S	T	T	T	T				.	.				T	T	T						S																T				.
Template Predicted Secondary structure																																															.	.																																.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.			.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.		.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90										.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.																																				.
Query SS confidence																						.	.	.	.	.	.	.	.	.																																				.
Query Sequence		V	L	V	T	S	G	P	G	A	T	N	A	I	T	G	I	A	T	A	Y	.	.	.	.	.	.	.	.	.	M	D	S	I	P	L	V	V	L	S	G	Q	V	A	T	S	L	I	G	Y	D	A	F	Q	E	C	D	M	V	G	I	S	R	P	V	.	V	K	H	S	F	L	V	K	Q	T	E	D	I	P	Q
Query Conservation																						.	.	.	.	.	.	.	.	.																																				.
Alig confidence																						.	.	.	.	.	.	.	.	.															.	.																				.
Template Conservation																																													.	.
Template Sequence		A	E	I	Q	F	A	D	Y	I	F	P	G	F	D	Q	L	V	S	Q	V	A	K	L	R	Y	R	S	G	G	Q	F	T	A	P	L	V	V	R	M	P	S	G	G	.	.	G	V	R	G	G	H	H	H	S	Q	S	P	E	A	H	F	V	H	T	A	G	L	K	V	V	A	V	S	T	P	Y	D	A	K	G
Template Known Secondary structure					S		G	G	G	G	G	G	G							T	T	T	T					T	T	T	S	S													.	.	S	S				S	S	S	S									T	S	T	T								S
Template Predicted Secondary structure																																													.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	K	K	A	F	W	L	A	A	S	G	R	P	G	P	V	V	V	D	L	P	K	D	I	L	N	P	A	N	K	L	P	Y	V	W	P	E	S	V	S	M	R	S	Y	N	P	T	T	T	G	H	K	G	Q	I	K	R	A	L	Q	T	L	V	A	A	K	K	P	V	V	Y	V	G	G	G	A	I	T	A
Query Conservation
Alig confidence									.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	K	A	A	I	R	.	.	.	.	.	D	E	D	P	V	V	F	L	E	P	K	R	L	Y	R	S	V	K	E	E	V	P	E	E	D	Y	T	L	P	I	G	K	A	A	L	R	R	E	G	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	L	I	C	Y	G	T	V	M	P
Template Known Secondary structure									.	.	.	.	.		S	S								G	G	G	S	S	S							S	S						T	T									S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							G	G	G
Template Predicted Secondary structure									.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.						.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.																	.	.	.	.	.	210	.	.	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	C	H	Q	Q	L	K	E	T	V	E	A	L	N	L	P	V	V	C	S	L	M	G	L	G	A	F	P	A	T	H	R	Q	A	L	G	M	L	G	M	H	G	T	Y	E	A	N	M	T	M	H	N	A	D	V	I	F	A	V
Query Conservation
Alig confidence											.										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	V	L	Q	A	A	A	E	L	.	A	K	A	G	V	S	A	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	L	R	T	L	M	P	W	D	Y	E	A	V	M	N	S	V	A	K	T	G	R	V	V	L	V
Template Known Secondary structure											.			T	T						.	.	.	.	.	.	.	.	.	.	.	.	.								T														S
Template Predicted Secondary structure											.										.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.														.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions