Job Description P00893 Confidence 25.30% Date Thu Jan 5 10:57:03 GMT 2012 Rank 229 Aligned Residues 124 % Identity 8% Template c1s1hB_ PDB info PDB header:ribosome Chain: B: PDB Molecule:40s ribosomal protein s0-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. Resolution 11.70 Å

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		194	.	.	.	.	.	200	.	.	.	.	.			.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence		G	Q	I	K	R	A	L	Q	T	L	V	A	.	.	A	K	K	P	V	V	Y	V	G	G	G	A	I	T	A	G	C	H	Q	Q	L	K	E	T	V	E	A	L	N	L	P	V	V	C	S	L	M	G	L	G	A	F	P	A	T	H	R	Q	A	L	G	M	L	G	M	H	G	T	Y	E	A	N	M	T	M	H
Query Conservation														.	.
Alig confidence														.	.										.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	K	L	V	L	A	A	R	I	I	A	A	I	P	N	P	E	D	V	V	A	I	S	.	.	.	S	R	T	F	G	Q	R	A	V	L	K	F	A	A	H	T	G	A	T	P	I	A	G	R	F	T	P	G	S	F	T	N	Y	I	T	R	S	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K
Template Known Secondary structure														T	T	T	T								.	.	.		S													T	S	S						S				T	T	T	T	T	T	T	T	T	S		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																									.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.				.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.																.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		N	A	D	V	I	F	A	V	G	V	R	F	D	D	R	T	T	N	N	.	L	A	K	Y	C	P	N	A	T	V	L	H	I	D	I	D	P	T	S	I	S	K	T	V	T	A	D	I	P	I	V	G	D	A	R	Q	V	L	E	Q	M	L	E	L	L
Query Conservation																					.
Alig confidence																					.
Template Conservation
Template Sequence		E	P	R	L	V	I	V	T	D	P	R	S	D	A	Q	A	I	K	E	A	S	Y	V	N	I	P	V	I	A	L	T	D	L	D	S	P	S	E	F	V	D	V	A	I	P	C	N	N	R	G	K	H	S	I	G	L	I	W	Y	L	L	A	R	E	V
Template Known Secondary structure				S					S		T	T	T	T											T									T	T	S		G	G	G		S					S		S	S
Template Predicted Secondary structure
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions