Job Description P00893 Confidence 95.11% Date Thu Jan 5 10:57:03 GMT 2012 Rank 125 Aligned Residues 137 % Identity 18% Template c1pt9B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:nad(p) transhydrogenase, mitochondrial; PDBTitle: crystal structure analysis of the diii component of transhydrogenase2 with a thio-nicotinamide nucleotide analogue Resolution 2.42 Å

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		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	K	R	A	L	Q	T	L	V	A	A	K	K	P	V	V	Y	V	G	G	G	A	I	T	A	G	C	H	Q	Q	L	K	E	T	V	E	A	L	N	L	P	V	V	C	S	L	M	G	L	G	A	F	P	A	T	H	R	Q	A	L	G	M	L	G	M	H	G	T	Y	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.
Template Sequence		L	D	N	A	I	D	M	I	R	E	A	N	S	I	I	I	T	P	G	Y	G	L	C	A	A	K	A	Q	Y	P	I	A	D	L	V	K	M	L	.	.	.	.	.	.	T	E	Q	G	K	K	V	R	F	G	I	H	P	V	A	G	R	M	P	G	Q	L	N	V	L	L	A	E	A	G	V	P	Y	D	I	V
Template Known Secondary structure													S													T	T													.	.	.	.	.	.			T	T									T	T		S	S	S	T	T									T	T			G	G	G
Template Predicted Secondary structure																																								.	.	.	.	.	.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.							.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
						265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.			.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.																	.	.	.	.	320	.	.
Predicted Secondary structure		.	.	.	.																																	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																																	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	E	A	N	M	T	M	H	N	A	D	V	I	F	A	V	G	V	R	F	D	D	R	T	T	N	N	L	A	K	Y	C	P	.	.	N	A	T	V	L	H	I	D	I	D	P	T	S	I	S	K	T	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	I	P	I	V	G
Query Conservation		.	.	.	.																																	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																																	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	M	D	E	I	N	H	D	F	P	D	T	D	L	V	L	V	I	G	A	N	D	T	V	N	S	A	A	Q	E	D	P	N	S	I	I	A	G	M	P	V	L	E	V	W	K	S	K	Q	V	I	V	M	K	R	S	L	G	V	G	Y	A	A	V	D	N	P	I	F	Y	K	P	N	T	A	M	L	L	G
Template Known Secondary structure								G	G	G	G	G	G		S						S			G	G	G		T						S	S	S	T	T	T	T						G	G	G	S	S							S	S	S				T	T					G	G	G	G	S	T	T						S
Template Predicted Secondary structure
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	R	Q	V	L	E	Q	M	L	E	L	L	S	Q	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	K	K	T	C	D	A	L	Q	A	K	V	R	E	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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