Job Description P00893 Confidence 97.56% Date Thu Jan 5 10:57:03 GMT 2012 Rank 100 Aligned Residues 244 % Identity 11% Template c1ni4D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:pyruvate dehydrogenase e1 component: beta PDBTitle: human pyruvate dehydrogenase Resolution 1.95 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.			.	.	.	.						.	.	.	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																					.	.					.	.	.	.	.																.	.
Query SS confidence																					.	.					.	.	.	.	.																.	.
Query Sequence		M	L	S	G	A	E	M	V	V	R	S	L	I	D	Q	G	V	K	Q	.	.	V	F	G	Y	.	.	.	.	.	P	G	G	A	V	L	D	I	Y	D	A	L	H	T	V	.	.	G	G	I	D	H	V	L	V	R	H	E	Q	A	A	V	H	M	A	D	G	L	A	R	A	T	G	E	V	G	V	V	L	V
Query Conservation																					.	.					.	.	.	.	.																.	.
Alig confidence																					.	.					.	.	.	.	.																.	.																													.
Template Conservation																																																																													.
Template Sequence		Q	V	T	V	R	D	A	I	N	Q	G	X	D	E	E	L	E	R	D	E	K	V	F	L	L	G	E	E	V	A	Q	Y	D	G	A	Y	K	V	S	R	G	L	W	K	K	Y	G	D	K	R	I	I	D	T	P	I	S	E	X	G	F	A	G	I	A	V	G	A	A	X	A	G	L	R	P	.	I	C	E	F
Template Known Secondary structure																					T	T						T	T		S	T	T			T	T	S	T	T	T	T							T	T	T						S															T	T				.
Template Predicted Secondary structure																																																																													.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.								.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.																																			.
Query SS confidence																				.	.	.	.	.	.	.																																			.
Query Sequence		T	S	G	P	G	A	T	N	A	I	T	G	I	A	T	A	Y	M	.	.	.	.	.	.	.	D	S	I	P	L	V	V	L	S	G	Q	V	A	T	S	L	I	G	Y	D	A	F	Q	E	C	D	M	V	G	I	S	R	P	V	.	V	K	H	S	F	L	V	K	Q	T	E	D	I	P	Q	V	L	K	K	A
Query Conservation																				.	.	.	.	.	.	.																																			.
Alig confidence																				.	.	.	.	.	.	.																																			.
Template Conservation
Template Sequence		X	T	F	N	F	S	X	Q	A	I	D	Q	V	I	N	S	A	A	K	T	Y	Y	X	S	G	G	L	Q	P	V	P	I	V	F	R	G	P	N	G	A	S	A	G	V	A	A	Q	H	S	Q	C	F	A	A	W	Y	G	H	C	P	G	L	K	V	V	S	P	W	N	S	E	D	A	K	G	L	I	K	S	A
Template Known Secondary structure		S	S	G	G	G	G	G	G	T							T	T	T	T					T	T	S	S												S			S	S			G	G	G										T	S	T	T								S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	W	L	A	A	S	G	R	P	G	P	V	V	V	D	L	P	K	D	I	L	N	P	A	N	K	L	P	Y	V	W	P	E	S	V	S	M	R	S	Y	N	P	T	T	T	G	H	K	G	Q	I	K	R	A	L	Q	T	L	V	A	A	K	K	P	V	V	Y	V	G	G	G	A	I	T	A	G	C	H	Q	Q
Query Conservation
Alig confidence				.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation				.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.												.
Template Sequence		I	R	.	.	.	.	.	D	N	N	P	V	V	V	L	E	N	E	L	X	Y	G	V	P	F	E	F	P	P	E	A	Q	S	K	D	F	L	I	P	I	G	K	A	K	I	.	.	.	.	.	.	.	.	.	.	.	.	E	R	Q	G	T	H	I	T	V	V	S	.	H	S	R	P	V	G	H	C	L	E	A
Template Known Secondary structure				.	.	.	.	.	S	S	S								T	T	T	T	T											S	T	T					T	T					.	.	.	.	.	.	.	.	.	.	.	.					S	S						.		S	T
Template Predicted Secondary structure				.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.												.
Template SS confidence
		161	.						.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200													.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	E	T	V	E	A	L	N	L	P	V	V	C	S	L	M	G	L	G	A	F	P	A	T	H	R	Q	A	L	G	M	L	G	M	H	G	T	Y	E	A	N	M	T	M	H	N	A	D	V	I	F	A	V
Query Conservation
Alig confidence									.							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	V	L	S	K	E	.	G	V	E	C	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	I	N	X	R	T	I	R	P	X	D	X	E	T	I	E	A	S	V	X	K	T	N	H	L	V	T	V
Template Known Secondary structure								T	.	T						.	.	.	.	.	.	.	.	.	.	.	.	.								T														S
Template Predicted Secondary structure									.							.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		223	.	.	.	.	.	.		230	.	.	.	.	.														.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions