Return to main results Retrieve Phyre Job Id

Job DescriptionP25437
Confidence100.00%DateThu Jan 5 11:41:49 GMT 2012
Rank3Aligned Residues369
% Identity48%Templatec3cosD_
PDB info PDB header:oxidoreductaseChain: D: PDB Molecule:alcohol dehydrogenase 4; PDBTitle: crystal structure of human class ii alcohol dehydrogenase (adh4) in2 complex with nad and zn
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
Predicted Secondary structure 




































Query SS confidence 















































































Query Sequence  MKSRAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKP
Query Conservation 
 


 
    
  
 
   
 
     





 
  

  
     
       
 
 
 
  
 
  

  
    
Alig confidence 















































































Template Conservation     

 
       
 
 
 
 
     





 
  

  
     
       
 
 
 
 

 

 

  
    
Template Sequence  IKCKAAIAWEAGKPLCIEEVEVAPPKAHEVRIQIIATSLCHTDATVIDSKFEGLAFPVIVGHEAAGIVESIGPGVTNVKP
Template Known Secondary structure  B
STTS





TT

TSTT

S

SSB




TT

S

T
Template Predicted Secondary structure 




































Template SS confidence 















































































   8.10.........20.........30.........40.........50.........60.........70.........80.......
 
   81........90.........100......... 110.........120.........130.........140.........150......
Predicted Secondary structure 


















....


































Query SS confidence 




























. . . .














































Query Sequence  GDHVIPLYTAECGECEFCRSGKTNLCVAV. . . . RETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKIN
Query Conservation 

 
                
        ....                             
  

             
Alig confidence 




























....














































Template Conservation 

 
                
                                         
  

   
         
Template Sequence  GDKVIPLYAPLCRKCKFCLSPLTNLCGKISNLKSPASDQQLMEDKTSRFTCKGKPVYHFFGTSTFSQYTVVSDINLAKID
Template Known Secondary structure  T

SS


SSSTTTT
TT



TT



S
GGGS
SS
TTS

STTB
STTT
TTBSTTS

Template Predicted Secondary structure 


























































Template SS confidence 















































































   88.90.........100.........110.........120.........130.........140.........150.........160.......
 
   157..160.........170.........180.........190.........200.........210.........220.........230......
Predicted Secondary structure 




























Query SS confidence 















































































Query Sequence  PEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCI
Query Conservation                                                                                  
Alig confidence 















































































Template Conservation                                                                                  
Template Sequence  DDANLERVCLLGCGFSTGYGAAINNAKVTPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINSEKFVKAKALGATDCL
Template Known Secondary structure  TT

GGGGTTTT


TT


STT
S
S
GGGTT
S
Template Predicted Secondary structure 





































Template SS confidence 















































































   168.170.........180.........190.........200.........210.........220.........230.........240.......
 
   237..240.........250.........260.........270.........280.........290.........300.........310......
Predicted Secondary structure 

































Query SS confidence 















































































Query Sequence  NPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAVAGQEISTRPFQLVTGRVWKGSAFGG
Query Conservation                         
                           
                            
Alig confidence 















































































Template Conservation                                                     
                    
       
Template Sequence  NPRDLHKPIQEVIIELTKGGVDFALDCAGGSETMKAALDCTTAGWGSCTFIGVAAGSKGLTVFPEELIIGRTINGTFFGG
Template Known Secondary structure 
GGG
SS
TS
BS
S
STB
TTT



TT






TTT
SGGG
Template Predicted Secondary structure 


































Template SS confidence 















































































   248.250.........260.........270.........280.........290.........300.........310.........320.......
 
   317..320.........330.........340.........350.........360.........
Predicted Secondary structure 

















Query SS confidence 




















































Query Sequence  VKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVIRY
Query Conservation              
   
 
     
     
    

   
  
   
 

  
Alig confidence 




















































Template Conservation              
   
 
     
     
     
   
  
   





Template Sequence  WKSVDSIPKLVTDYKNKKFNLDALVTHTLPFDKISEAFDLMNQGKSIRTILIF
Template Known Secondary structure 

TTSS
SGGGGGGTT

S
Template Predicted Secondary structure 
















Template SS confidence 




















































   328.330.........340.........350.........360.........370.........380
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions