Job Description P25437 Confidence 99.72% Date Thu Jan 5 11:41:49 GMT 2012 Rank 89 Aligned Residues 289 % Identity 14% Template c2vz8B_ PDB info PDB header:transferase Chain: B: PDB Molecule:fatty acid synthase; PDBTitle: crystal structure of mammalian fatty acid synthase Resolution 3.2 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		V	A	P	P	K	K	G	E	V	L	I	K	V	T	H	T	G	V	C	H	T	D	A	F	T	L	S	G	D	D	P	E	G	V	F	P	V	V	L	G	H	E	G	A	G	V	V	V	E	V	G	E	G	V	T	.	S	V	K	P	G	D	H	V	I	P	L	Y	T	A	E	C	G	E	C	E	F	C	R	S
Query Conservation																																																									.
Alig confidence																																	.	.	.	.																					.												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	L	P	A	S	C	Q	D	R	L	C	S	V	Y	Y	T	S	L	N	F	R	D	V	M	L	A	T	G	K	L	S	.	.	.	.	P	D	S	I	P	G	K	W	L	T	R	D	C	M	L	G	M	E	F	S	G	R	D	A	S	G	R	R	V	M	G	M	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					T	T	S	T	T	T																			T	S	S		.	.	.	.	G	G	G			S			S		S	S												T	T								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1554	.	.	.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.	.	.	.	.	.	.	.	1580	.	.	.	.					.	.	.	.	.	1590	.	.	.	.	.	.	.	.	.	1600	.	.	.	.	.	.	.	.	.	1610	.	.	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	T	N	L	C	V	A	V	R	E	T	Q	G	K	G	L	M	P	D	G	T	T	R	F	S	Y	N	G	Q	P	L	Y	H	Y	M	G	C	S	T	F	S	E	Y	T	V	V	A	E	V	S	L	A	K	I	N	P	E	A	N	H	E	H	V	C	L	L	G	C	G	V	T	T	G	I	G	A	V	H	N
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	P	A	E	G	L	A	T	S	V	L	L	L	Q	H	A	T	W	E	V	P	S	T	W	T	L	E	E	A	A	S	V	P	I	V	Y	T	T	A	Y	Y	S	L	V	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S			S	B	S						G	G	G						T	T	S						T	T													T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																					1617	.	.	1620	.	.	.	.	.	.	.	.	.	1630	.	.	.	.	.	.	.	.	.	1640	.	.	.	.	.	.	.	.	.	1650	.	.	.	.	.	.	.	.	.	1660	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.					230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.
Query SS confidence																																																			.	.	.	.
Query Sequence		T	A	K	V	Q	P	G	D	S	V	A	V	F	G	L	G	A	I	G	L	A	V	V	Q	G	A	R	Q	A	K	A	G	R	I	I	A	I	D	T	N	P	K	K	F	D	L	A	R	R	.	.	.	.	F	G	A	T	D	C	I	N	P	N	D	Y	D	K	P	I	K	D	V	L	L	D	I	N	K	W	G
Query Conservation																																																			.	.	.	.
Alig confidence																																																			.	.	.	.														.	.
Template Conservation																																																																				.	.
Template Sequence		R	G	R	M	Q	P	G	E	S	V	L	I	H	S	G	S	G	G	V	G	Q	A	A	I	A	I	A	L	S	R	G	C	R	V	F	T	T	V	G	S	A	E	K	R	A	Y	L	Q	A	R	F	P	Q	L	D	E	T	C	F	A	N	S	R	D	T	S	.	.	F	E	Q	H	V	L	R	H	T	A	G	K
Template Known Secondary structure		T	T				T	T								S	S	S													T	T								S													T	T			S	T	T				S	S	S	S		.	.								T	T	T	T
Template Predicted Secondary structure																																																																				.	.
Template SS confidence
		1662	.	.	.	.	.	.	.	1670	.	.	.	.	.	.	.	.	.	1680	.	.	.	.	.	.	.	.	.	1690	.	.	.	.	.	.	.	.	.	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.	.	.	.	.	1720	.	.	.	.	.	.	.			.	.	1730	.	.	.	.	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.							.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure																																																													.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.
Query Sequence		I	D	H	T	F	E	C	I	G	N	V	N	V	M	R	A	A	L	E	S	A	H	R	G	W	G	Q	S	V	I	I	G	V	A	V	A	G	Q	E	I	S	T	R	P	F	Q	L	V	T	G	R	V	W	K	G	S	A	F	G	.	.	.	.	.	.	G	V	K	G	R	S	Q	L	P	G	M	V	E	D	A
Query Conservation																																																													.	.	.	.	.	.
Alig confidence																						.																																							.	.	.	.	.	.
Template Conservation																						.
Template Sequence		G	V	D	L	V	L	N	S	L	A	E	E	K	L	Q	A	S	V	R	C	.	L	A	Q	H	G	R	F	L	E	I	G	K	F	D	L	S	N	N	H	A	L	G	M	A	V	F	L	K	N	V	T	F	H	G	I	L	L	D	S	L	F	E	E	G	G	A	T	W	Q	E	V	S	E	L	L	K	A	G	I
Template Known Secondary structure																				T	T	.																	T	T					T	T	G	G	G	G	T								T					T	S
Template Predicted Secondary structure																						.
Template SS confidence
		1740	.	.	.	.	.	.	.	.	.	1750	.	.	.	.	.	.	.	.	.		1760	.	.	.	.	.	.	.	.	.	1770	.	.	.	.	.	.	.	.	.	1780	.	.	.	.	.	.	.	.	.	1790	.	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.	.	.	.	.	.	.	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	G	D	I	D	L	E	P	F	V	T	H	T	M	S	L	D	E	I	N	D	A	F	D	L	M	H	E	G	K	S	I	R	T	V	I
Query Conservation
Alig confidence												.	.
Template Conservation												.	.
Template Sequence		Q	E	G	V	V	Q	P	L	K	C	.	.	T	V	F	P	R	T	K	V	E	A	A	F	R	Y	M	A	Q	G	K	H	I	G	K	V	V
Template Known Secondary structure		T	T	T		S						.	.					S	S	T										T	T			S	S
Template Predicted Secondary structure												.	.
Template SS confidence
		1819	1820	.	.	.	.	.	.	.	.			.	1830	.	.	.	.	.	.	.	.	.	1840	.	.	.	.	.	.	.	.	.	1850	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions