Phyre 2 alignment of P25437 with c1yb5A

Job Description P25437
Confidence 100.00% Date Thu Jan 5 11:41:49 GMT 2012

Rank 53 Aligned Residues 311

% Identity 20% Template c1yb5A_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:quinone oxidoreductase; PDBTitle: crystal structure of human zeta-crystallin with bound nadp

Resolution 1.85 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	3	.	.	.	.	.	.	10	.	.	.	.			.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.				.																																						.
Query SS confidence													.	.				.																																						.
Query Sequence	S	R	A	A	V	A	F	A	P	G	K	P	.	.	L	E	I	.	V	E	I	D	V	A	P	P	K	K	G	E	V	L	I	K	V	T	H	T	G	V	C	H	T	D	A	F	T	L	S	G	D	D	P	E	G	.	V	F	P	V	V	L	G	H	E	G	A	G	V	V	V	E	V	G	E	G	V	T	S	V
Query Conservation													.	.				.																																						.
Alig confidence													.	.				.																																						.
Template Conservation
Template Sequence	M	R	A	V	R	V	F	E	F	G	G	P	E	V	L	K	L	R	S	D	I	A	V	P	I	P	K	D	H	Q	V	L	I	K	V	H	A	C	G	V	N	P	V	E	T	Y	I	R	S	G	T	Y	S	R	K	P	L	L	P	Y	T	P	G	S	D	V	A	G	V	I	E	A	V	G	D	N	A	S	A	F
Template Known Secondary structure							S	S		S	S	G	G	G														T	T																					T		S	S					S	S	B				S											T	T		T	T
Template Predicted Secondary structure
Template SS confidence
	8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.

	79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	P	G	D	H	V	I	P	L	Y	T	A	E	C	G	E	C	E	F	C	R	S	G	K	T	N	L	C	V	A	V	R	E	T	Q	G	K	G	L	M	P	D	G	T	T	R	F	S	Y	N	G	Q	P	L	Y	H	Y	M	G	C	S	T	F	S	E	Y	T	V	V	A	E	V	S	L	A	K	I	N	P	E
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	K	K	G	D	R	V	F	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	I	S	G	G	Y	A	E	Y	A	L	A	A	D	H	T	V	Y	K	L	P	E	K
Template Known Secondary structure		T	T						S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S		S	S	B	S						G	G	G						T	T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	88	.	90	.	.	.	.	.	.																																																.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120

	159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	N	H	E	H	V	C	L	L	G	C	G	V	T	T	G	I	G	A	V	H	N	T	A	K	V	Q	P	G	D	S	V	A	V	F	G	L	G	A	I	G	L	A	V	V	Q	G	A	R	Q	A	K	A	G	R	I	I	A	I	D	T	N	P	K	K	F	D	L	A	R	R	F	G	A	T	D	C	I	N	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence	L	D	F	K	Q	G	A	A	I	G	I	P	Y	F	T	A	Y	R	A	L	I	H	S	A	C	V	K	A	G	E	S	V	L	V	H	G	A	S	G	G	V	G	L	A	A	C	Q	I	A	R	A	Y	G	L	K	I	L	G	T	A	G	T	E	E	G	Q	K	I	V	L	Q	N	G	A	H	E	V	F	N	H
Template Known Secondary structure	S						T	T	T													T	T	S				T	T							T		S	S													T	T								S	S										T	T		S					T
Template Predicted Secondary structure
Template SS confidence
	121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200

	239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	D	Y	D	K	P	I	K	D	V	L	L	D	I	N	K	W	G	I	D	H	T	F	E	C	I	G	N	V	N	V	M	R	A	A	L	E	S	A	H	R	G	W	G	Q	S	V	I	I	G	V	A	V	A	G	Q	E	I	S	T	R	P	F	Q	L	V	T	G	R	V	W	K	G	S	A	F	G	G	V	K
Query Conservation
Alig confidence					.	.																																	.																.	.	.
Template Conservation					.	.																																	.																.	.	.
Template Sequence	R	E	V	N	.	.	Y	I	D	K	I	K	K	Y	V	G	E	K	G	I	D	I	I	I	E	M	L	A	N	V	N	L	S	K	D	L	S	L	.	L	S	H	G	G	R	V	I	V	V	G	S	R	G	T	.	.	.	I	E	I	N	P	R	D	T	M	A	K	E	S	S	I	I	G	V	T	L	F	S	S
Template Known Secondary structure	T	S	T	T	.	.											T	T								S													.														S		.	.	.					T					T	T	T								G	G	G
Template Predicted Secondary structure					.	.																																	.																.	.	.
Template SS confidence
	201	.	.	.			.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.		.	.	.	240	.	.	.	.	.	.	.	.	.	250	.				.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.

	319					320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.			.	.	.	.	.
Predicted Secondary structure		.	.	.	.																																													.	.
Query SS confidence		.	.	.	.																																													.	.
Query Sequence	G	.	.	.	.	R	S	Q	L	P	G	M	V	E	D	A	M	K	G	D	I	D	L	E	P	F	V	T	H	T	M	S	L	D	E	I	N	D	A	F	D	L	M	H	E	G	K	S	I	.	.	R	T	V	I	R
Query Conservation		.	.	.	.																																													.	.
Alig confidence		.	.	.	.																	.	.																											.	.
Template Conservation																						.	.
Template Sequence	T	K	E	E	F	Q	Q	Y	A	A	A	L	Q	A	G	M	E	I	G	W	L	.	.	K	P	V	I	G	S	Q	Y	P	L	E	K	V	A	E	A	H	E	N	I	I	H	G	S	G	A	T	G	K	M	I	L	L
Template Known Secondary structure																			T			.	.										G	G	G											S	S			S	S
Template Predicted Secondary structure																						.	.
Template SS confidence
	275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.			.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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