Job Description P39406 Confidence 91.79% Date Thu Jan 5 12:00:42 GMT 2012 Rank 357 Aligned Residues 87 % Identity 23% Template c3trkA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:nonstructural polyprotein; PDBTitle: structure of the chikungunya virus nsp2 protease Resolution 2.40 Å

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		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.			270	.				.	.	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.			.	.	.																.
Query SS confidence																												.	.			.	.	.																.
Query Sequence		G	V	E	G	E	V	F	A	S	N	V	F	S	E	V	K	G	R	F	D	M	I	I	S	N	P	.	.	P	F	.	.	.	H	D	G	M	Q	T	S	L	D	A	A	Q	T	L	I	.	R	G	A	V	R	H	L	N	S	G	G	E	L	R	I	V	A	N	A	F	L	P	Y	P	D	V	L	D	E	T	F
Query Conservation																												.	.			.	.	.																.
Alig confidence																												.	.			.	.	.																.																.	.	.
Template Conservation																																																																		.	.	.
Template Sequence		G	A	D	Y	T	Y	N	L	E	L	G	L	P	A	T	L	G	R	Y	D	L	V	V	I	N	I	H	T	P	F	R	I	H	H	Y	Q	Q	C	V	D	H	A	X	K	L	Q	X	L	G	G	D	S	L	R	L	L	K	P	G	G	S	L	L	I	.	.	.	R	A	Y	G	Y	A	D	R	T	S	E	R	V
Template Known Secondary structure		S		S					G	G	G				G	G	G																S	S																			G	G	G	G										.	.	.							S
Template Predicted Secondary structure																																																																		.	.	.
Template SS confidence
		1196	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.				1260	.	.	.	.	.	.	.	.	.	1270	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	H	E	V	I	A	Q	T	G	R	F	K	V	Y	R	A	I	M	T
Query Conservation
Alig confidence		.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	I	C	V	L	G	R	K	F	R	S	S	R	A	L	K	P
Template Known Secondary structure		.	.	.	.						T	T
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						1273	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions