Job Description P39406 Confidence 99.70% Date Thu Jan 5 12:00:42 GMT 2012 Rank 116 Aligned Residues 147 % Identity 19% Template c3m6wA_ PDB info PDB header:transferase Chain: A: PDB Molecule:rrna methylase; PDBTitle: multi-site-specific 16s rrna methyltransferase rsmf from thermus2 thermophilus in space group p21212 in complex with s-adenosyl-l-3 methionine Resolution 1.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.		.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.																																											.	.
Query SS confidence																																					.																																											.	.
Query Sequence		D	V	G	S	Q	L	L	L	S	T	L	T	P	H	T	K	G	K	V	L	D	V	G	C	G	A	G	V	L	S	V	A	F	A	R	.	H	S	P	K	I	R	L	T	L	C	D	V	S	A	P	A	V	E	A	S	R	A	T	L	A	A	N	G	V	E	G	E	V	F	A	S	N	V	F	S	E	V	.	.
Query Conservation																																					.																																											.	.
Alig confidence																																					.																																											.	.
Template Conservation
Template Sequence		E	P	S	A	Q	A	V	G	V	L	L	D	P	K	P	G	E	R	V	L	D	L	A	A	A	P	G	G	K	T	T	H	L	A	A	R	M	G	G	K	G	L	L	L	A	N	E	V	D	G	K	R	V	R	G	L	L	E	N	V	E	R	W	G	A	P	L	A	V	T	Q	A	P	P	R	A	L	A	E	A
Template Known Secondary structure			T	T	T											T	T						S	S		T	T											T	T	T		S							S																								S
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
			259	260	.	.	.	.	.	.	.	.	.	270	.																		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	K	G	R	F	D	M	I	I	S	N	P	P	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	D	G	M	Q	T	S	L	D	A	A	Q	T	L	I	R	G	A	V	R	H	L	N	S	G	G	E	L	R	I	V	A	N	A	F	L	P	Y	P	D	V	L	D	E	T	F	G	F	H
Query Conservation		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.
Template Conservation																																																																									.	.
Template Sequence		F	G	T	Y	F	H	R	V	L	L	D	A	P	C	S	G	E	G	M	F	R	K	D	R	E	A	A	R	H	W	G	P	S	A	P	K	R	M	A	E	V	Q	K	A	L	L	A	Q	A	S	R	L	L	G	P	G	G	V	L	V	Y	S	T	C	T	F	A	P	E	E	N	.	.	E	G	V	V	A	H	F
Template Known Secondary structure				S														G	G	G	T	T	T		T	T	S	G	G	G			T	T																		T	T												S				G	G	G	T	.	.
Template Predicted Secondary structure																																																																									.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	I	A	Q	T	G	R	F	K	V	Y
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	L	K	A	H	P	E	F	R	L	E
Template Known Secondary structure		.	.					T	T
Template Predicted Secondary structure		.	.
Template SS confidence
				245	.	.	.	.	250	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions