Job Description P39406 Confidence 98.38% Date Thu Jan 5 12:00:42 GMT 2012 Rank 293 Aligned Residues 123 % Identity 17% Template c3lkzB_ PDB info PDB header:viral protein Chain: B: PDB Molecule:non-structural protein 5; PDBTitle: structural and functional analyses of a conserved hydrophobic pocket2 of flavivirus methyltransferase Resolution 2.00 Å

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		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.							230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																																												.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.
Query Sequence		L	L	S	T	L	T	P	H	T	K	G	K	V	L	D	V	G	C	G	A	G	V	L	S	V	A	F	A	R	H	S	P	K	I	R	L	T	L	C	D	V	S	.	.	.	.	.	.	A	P	A	V	E	A	S	R	A	T	L	A	A	N	G	V	E	G	E	V	F	A	S	N	V	F	S	E	V	K	G	R
Query Conservation																																												.	.	.	.	.	.
Alig confidence																																												.	.	.	.	.	.							.	.	.	.	.
Template Conservation																																																								.	.	.	.	.
Template Sequence		L	V	E	R	R	F	L	E	P	V	G	K	V	I	D	L	G	C	G	R	G	G	W	C	Y	Y	M	A	T	Q	K	R	V	Q	E	V	R	G	Y	T	K	G	G	P	G	H	E	E	P	Q	L	V	Q	S	.	.	.	.	.	Y	G	W	N	I	V	T	M	K	S	G	V	D	V	F	Y	R	P	S	E	C
Template Known Secondary structure					T	T	S											T		T	T								T	T		T	T											S	T	T	S								B	.	.	.	.	.	T	T	G	G	G						S			T	T	S	S
Template Predicted Secondary structure																																																								.	.	.	.	.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.						.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		262	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.		.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure										.																												.
Query SS confidence										.																												.
Query Sequence		F	D	M	I	I	S	N	P	.	P	F	H	D	G	M	Q	T	S	L	D	A	A	Q	T	L	I	R	G	A	V	R	H	L	N	S	G	.	G	E	L	R	I	V	A	N	A	F	L	P	Y	P	D	V	L	D	E	T	F
Query Conservation										.																												.
Alig confidence										.																												.								.	.
Template Conservation																																														.	.
Template Sequence		C	D	T	L	L	C	D	I	G	E	S	S	S	S	A	E	V	E	E	H	R	T	I	R	V	L	E	M	V	E	D	W	L	H	R	G	P	R	E	F	C	V	K	V	.	.	L	C	P	Y	M	P	K	V	I	E	K	M
Template Known Secondary structure			S											S																					T	T										.	.	S		T	T	S
Template Predicted Secondary structure																																														.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.			.	.	.	.	.	.	190	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions