Job Description P39406 Confidence 43.79% Date Thu Jan 5 12:00:42 GMT 2012 Rank 496 Aligned Residues 134 % Identity 13% Template c3k1qA_ PDB info PDB header:virus Chain: A: PDB Molecule:vp1, the protein that forms the mrna-capping PDBTitle: backbone model of an aquareovirus virion by cryo-electron2 microscopy and bioinformatics Resolution 4.50 Å

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		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.				.	.	.	260	.	.	.
Predicted Secondary structure																																																																								.	.	.
Query SS confidence																																																																								.	.	.
Query Sequence		L	L	L	S	T	L	T	P	H	T	K	G	K	V	L	D	V	G	C	G	A	G	V	L	S	V	A	F	A	R	H	S	P	K	I	R	L	T	L	C	D	V	S	A	P	A	V	E	A	S	R	A	T	L	A	A	N	G	V	E	G	E	V	F	A	S	N	V	F	S	.	.	.	E	V	K	G	R	F	D
Query Conservation																																																																								.	.	.
Alig confidence																														.	.																					.	.	.	.																	.	.	.
Template Conservation																														.	.																					.	.	.	.
Template Sequence		F	I	S	E	Q	T	R	N	P	N	L	A	H	L	L	D	L	G	T	G	P	E	C	R	I	L	S	L	.	.	I	P	P	T	L	Q	V	T	M	S	D	S	R	P	C	A	E	L	M	A	.	.	.	.	S	F	D	P	A	L	T	A	Y	V	Q	G	D	Y	S	T	A	A	F	W	N	G	I	R	C	D
Template Known Secondary structure					T	S	T	T	T	T									S			T	T		T					.	.	S		T	T									S				S	S	S	S	.	.	.	.	S			T	T	T						S		T	T	S	S	S		G	G	G				S
Template Predicted Secondary structure																														.	.																					.	.	.	.
Template SS confidence
		818	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.			.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.					.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.			.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.
Query SS confidence																																				.	.
Query Sequence		M	I	I	S	N	P	P	F	H	D	G	M	Q	T	S	L	D	A	A	Q	T	L	I	R	G	A	V	R	H	L	N	S	G	G	.	.	E	L	R	I	V	A	N	A	F	L	P	Y	P	D	V	L	D	E	T	F	G	F	H	E	V	I	A	Q	T	G	R	F
Query Conservation																																				.	.
Alig confidence																																				.	.																				.	.	.
Template Conservation																																																									.	.	.
Template Sequence		S	A	T	A	I	F	T	I	G	A	A	A	A	A	A	G	T	D	L	I	A	F	V	Q	Q	L	I	P	R	I	V	A	A	G	G	T	R	M	W	L	Q	L	N	T	P	L	Y	E	V	S	S	L	P	D	L	.	.	.	I	E	I	D	L	R	D	H	V	Y
Template Known Secondary structure							S										T																T	T	T									B			S	S	S				B	T	T	T	.	.	.					T	T	T	T
Template Predicted Secondary structure																																																									.	.	.
Template SS confidence
		892	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.				.	.	.	950	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions