Job Description P39406 Confidence 99.65% Date Thu Jan 5 12:00:42 GMT 2012 Rank 165 Aligned Residues 120 % Identity 16% Template c3k0bA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted n6-adenine-specific dna methylase; PDBTitle: crystal structure of a predicted n6-adenine-specific dna methylase2 from listeria monocytogenes str. 4b f2365 Resolution 1.50 Å

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		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.																																							.	220	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	Q	L	L	L	S	T	L	T	P	H	T	K	G	K	V	L	D	V	G	C	G	A	G	V	L	S	V	A	F	A	R	H	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	K	I	R	L	T	L	C
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	A	L	V	L	L	T	S	W	H	P	D	R	P	F	Y	D	P	V	C	G	S	G	T	I	P	I	E	A	A	L	I	G	Q	N	I	A	P	G	F	N	R	E	F	V	S	E	T	W	D	W	X	P	K	Q	V	W	A	D	A	R	Q	E	A	E	D	L	A	N	Y	D	Q	P	L	N	I	I	G	G
Template Known Secondary structure									S				T	T	S					T	T		T	T	S											T	T			T	T	T	T	S			G	G	G	G		T	T	S																		T	T
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.			.	.	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.			.	.	.	.	.	300	.
Predicted Secondary structure																						.	.												.																																						.	.
Query SS confidence																						.	.												.																																						.	.
Query Sequence		D	V	S	A	P	A	V	E	A	S	R	A	T	L	A	A	N	G	V	E	.	.	G	E	V	F	A	S	N	V	F	S	E	.	V	K	G	R	F	D	M	I	I	S	N	P	P	F	H	D	G	M	Q	T	S	L	D	A	A	Q	T	L	I	R	G	A	V	R	H	L	N	.	.	S	G	G	E	L	R	I
Query Conservation																						.	.												.																																						.	.
Alig confidence																						.	.												.																				.																		.	.
Template Conservation																																																							.
Template Sequence		D	I	D	A	R	L	I	E	I	A	K	Q	N	A	V	E	A	G	L	G	D	L	I	T	F	R	Q	L	Q	V	A	D	F	Q	T	E	D	E	Y	G	V	V	V	A	N	P	P	Y	G	E	R	L	E	.	D	E	E	A	V	R	Q	L	Y	R	E	X	G	I	V	Y	K	R	X	P	T	W	S	V	Y	V
Template Known Secondary structure			S															T	T		T	T		S							G	G	G							S												S			.																		T		T	T
Template Predicted Secondary structure																																																							.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
		302	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	N	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	S	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		338	.	340	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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