Job Description P39406 Confidence 100.00% Date Thu Jan 5 12:00:42 GMT 2012 Rank 2 Aligned Residues 329 % Identity 23% Template c3dmgA_ PDB info PDB header:transferase Chain: A: PDB Molecule:probable ribosomal rna small subunit methyltransferase; PDBTitle: t. thermophilus 16s rrna n2 g1207 methyltransferase (rsmc) in complex2 with adohcy Resolution 1.55 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	A	S	E	V	L	L	R	H	S	D	D	F	E	Q	S	R	I	L	F	A	G	D	L	Q	D	D	L	P	A	R	L	D	T	A	A	S	R	A	H	T	Q	Q	F	H	H	W	Q	V	L	S	R	Q	M	G	D	N	A	R	F	S	L	V	A	T	A	D	D	V	A	D	C	D	T	L	I	Y	Y	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	P	V	H	D	L	L	Q	K	T	V	E	P	F	G	E	R	A	L	D	L	N	P	G	V	G	W	G	S	L	P	L	E	G	R	M	A	V	E	R	L	E	T	S	R	A	A	F	R	C	L	T	A	S	G	L	Q	A	R	L	A	L	P	W	E	A	A	A	G	A	Y	D	L	V	V	L	A	L	P	A
Template Known Secondary structure										T	T					S	S					S	S		T	T	S	T	T	T	G	G	G	B	T	T	B								B										T	T								G	G	G	S		T	T											G
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	K	N	K	P	E	A	Q	F	Q	L	M	N	L	L	S	L	L	P	V	G	T	D	I	F	V	V	G	E	N	R	S	G	V	R	S	A	E	Q	M	L	A	D	Y	A	P	L	N	K	V	D	S	A	R	R	C	G	L	Y	F	G	R	L	E	K	Q	P	V	F	D	A	E	K	F	W	G	E	Y	S	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	R	G	T	A	Y	V	Q	A	S	L	V	A	A	A	R	A	L	R	M	G	G	R	L	Y	L	A	G	D	K	N	K	G	F	E	R	Y	F	K	E	A	R	A	L	L	G	Y	G	V	V	V	R	R	E	G	P	Y	R	V	A	L	L	E	K	E	K	E	A	P	P	L	P	S	L	W	R	A	F	S	A
Template Known Secondary structure		G	G																												G	G	G	T													S									T	T										S
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
						165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.							.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure		.	.	.	.																																.	.	.	.	.	.
Query SS confidence		.	.	.	.																																.	.	.	.	.	.
Query Sequence		.	.	.	.	D	G	L	T	V	K	T	L	P	G	V	F	S	R	D	G	L	D	V	G	S	Q	L	L	L	S	T	L	T	P	H	.	.	.	.	.	.	T	K	G	K	V	L	D	V	G	C	G	A	G	V	L	S	V	A	F	A	R	H	S	P	K	I	R	L	T	L	C	D	V	S	A	P	A	V	E
Query Conservation		.	.	.	.																																.	.	.	.	.	.
Alig confidence		.	.	.	.																																.	.	.	.	.	.																									.	.
Template Conservation																																																																			.	.
Template Sequence		R	I	L	G	A	E	Y	T	F	H	H	L	P	G	V	F	S	A	G	K	V	D	P	A	S	L	L	L	L	E	A	L	Q	E	R	L	G	P	E	G	V	R	G	R	Q	V	L	D	L	G	A	G	Y	G	A	L	T	L	P	L	A	R	M	G	A	.	.	E	V	V	G	V	E	D	D	L	A	S	V	L
Template Known Secondary structure				T	T									T	T		T	T	T	T	S																		T	T	T	T	T	T							T		T	T	S	T	T							T	T		.	.							S	B
Template Predicted Secondary structure																																																																			.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.			.	.	.	260	.	.	.	.	.	.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.			.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		A	S	R	A	T	L	A	A	N	G	V	E	G	E	V	F	A	S	N	V	F	S	E	V	.	.	K	G	R	F	D	M	I	I	S	N	P	P	F	H	D	G	M	Q	T	S	L	D	A	A	Q	T	L	I	R	G	A	V	R	H	L	N	S	G	G	E	L	R	I	V	A	N	A	F	L	P	Y	P	D	V
Query Conservation																										.	.
Alig confidence																										.	.
Template Conservation
Template Sequence		S	L	Q	K	G	L	E	A	N	A	L	K	A	Q	A	L	H	S	D	V	D	E	A	L	T	E	E	A	R	F	D	I	I	V	T	N	P	P	F	H	V	G	G	A	V	I	L	D	V	A	Q	A	F	V	N	V	A	A	A	R	L	R	P	G	G	V	F	F	L	V	S	N	P	F	L	K	Y	E	P	L
Template Known Secondary structure										T	T									S	T	T	T	T	S		T	T														T	T		S	S																												T	T	S
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	E	T	F	G	F	H	E	V	I	A	Q	T	G	R	F	K	V	Y	R	A	I	M
Query Conservation
Alig confidence													.
Template Conservation													.
Template Sequence		L	E	E	K	F	G	A	F	Q	T	L	.	K	V	A	E	Y	K	V	L	F	A	E	K
Template Known Secondary structure							S						.			S	S	S
Template Predicted Secondary structure													.
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360		.	.	.	.	.	.	.	.	.	370	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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