 |
Job Description | P39406 | Confidence | 72.74% | Date | Thu Jan 5 12:00:42 GMT 2012 |
Rank | 415 | Aligned Residues | 111 |
% Identity | 12% | Template | c3db2C_ |
PDB info |
PDB header:oxidoreductase | Chain: C: PDB Molecule:putative nadph-dependent oxidoreductase; |
PDBTitle: crystal structure of a putative nadph-dependent oxidoreductase2 (dhaf_2064) from desulfitobacterium hafniense dcb-2 at 1.70 a3 resolution
|
Resolution | 1.70 Å |
|
 |
  |   |
199 | 200 | . | . | . | . | . | . | |
. | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | |
. | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
| . |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | V | L | D | V | G | C | G | . |
A | G | V | L | S | V | A | F | A | R | H | S | P | K | I | R | L | T | L | C | . |
D | V | S | A | P | A | V | E | A | S | R | A | T | L | A | A | N | G | V | E | G | E | V | F | A | S | N | V | F | S | E | V | K | G | R | F | D | M | I | I | S | N | P | P | F | H | D | G | M | Q |
Query Conservation |   |
  |
|
|
|
|
|   |
| . |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|   |
|
|
|   |
|   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|
|   |
|   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . |   |   |   |   |   |   |   |   |   |
|
|
|   |   |   |   |
|
|   |
|   |
|   |
|
|   |   |   |
|   |   |
Template Sequence |   |
G | V | A | A | I | G | L | G | R | W | A | Y | V | X | A | D | A | Y | T | K | S | E | K | L | K | L | V | T | C | Y | S | R | T | E | D | K | R | E | K | F | G | K | R | Y | . |
. |
. |
. |
. |
N | C | A | G | D | A | T | X | E | A | L | L | A | R | E | D | V | E | X | V | I | I | T | V | P | N | D | K | H | A | E |
Template Known Secondary structure |   |
 |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  | T | T |
| T | T |  |  |  |  |  |  |  |
| S | S |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | T |
|  |  |
| S | S |  |  |  |  |  | T |
| T | T |
|
|  |  |  |  |
| S |
| G | G | G |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . |
|
|
|  |  |
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
6 | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
  |
  |   |
277 | . | . | 280 | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | S | L | D | A | A | Q | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
T | L | I | R | G | A | V | R | H | L | N | S | G | G | E | L | R | I | V | A | N | A | F | L | P | Y | P | D | V | L | D |
Query Conservation |   |
  |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |
|   |   |
|   |
|   |   |
|   |
|   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|
|   |   |
|
|
|
|   |   |
|
|
|   |
|   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |
|   |   |   |   |
Template Sequence |   |
V | I | E | Q | C | A | R | S | G | K | H | I | Y | V | E | K | P | I | S | V | S | L | D | H | A | Q | R | I | D | Q | V | I | K | E | T | G | V | K | F | L | C | G | H | S | S | R | R | L | G | A | L | R | K |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | T | T |
|  |  |  |  |  | S | S | S |
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
| G | G | G | G | S |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|