Job Description P39406 Confidence 99.83% Date Thu Jan 5 12:00:42 GMT 2012 Rank 21 Aligned Residues 179 % Identity 16% Template c3c0kB_ PDB info PDB header:transferase Chain: B: PDB Molecule:upf0064 protein yccw; PDBTitle: crystal structure of a ribosomal rna methyltranferase Resolution 2.00 Å

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		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		F	D	A	E	K	F	W	G	E	Y	S	V	D	G	L	T	V	K	T	L	P	G	V	F	S	R	D	G	L	D	V	G	S	Q	L	L	L	S	T	L	T	P	.	H	T	K	G	K	V	L	D	V	G	C	G	A	G	V	L	S	V	A	F	A	R	H	S	P	K	I	R	L	T	L	C	D	V	S	A	P
Query Conservation																																												.
Alig confidence																																												.																											.
Template Conservation																																																																							.
Template Sequence		G	E	L	P	P	A	L	L	P	I	E	E	H	G	X	K	L	L	V	D	I	Q	H	G	H	K	T	G	Y	Y	L	D	Q	R	D	S	R	L	A	T	R	R	Y	V	E	N	K	R	V	L	N	C	F	S	Y	T	G	G	F	A	V	S	A	L	X	G	G	C	S	.	Q	V	V	S	V	D	T	S	Q	E
Template Known Secondary structure		S					S	S						T	T							T	T	T	S	S	T	T	S	S		G	G	G												T	T							T		T	T	T									T	T		S	.							S
Template Predicted Secondary structure																																																																							.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.				.	.	.	.	250	.	.	.	.	.	.	.	.							.	260	.	.	.	.	.	.	.	.	.	270	.	.					.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.														.	.	.	.	.	.															.	.	.	.
Query SS confidence																.	.	.														.	.	.	.	.	.															.	.	.	.
Query Sequence		A	V	E	A	S	R	A	T	L	A	A	N	G	V	.	.	.	E	G	E	V	F	A	S	N	V	F	S	E	V	.	.	.	.	.	.	K	G	R	F	D	M	I	I	S	N	P	P	F	H	.	.	.	.	D	G	M	Q	T	S	L	D	A	A	Q	T	L	I	R	G	A	V	R	H	L	N	S	G	G	E
Query Conservation																.	.	.														.	.	.	.	.	.															.	.	.	.
Alig confidence																.	.	.														.	.	.	.	.	.															.	.	.	.
Template Conservation
Template Sequence		A	L	D	I	A	R	Q	N	V	E	L	N	K	L	D	L	S	K	A	E	F	V	R	D	D	V	F	K	L	L	R	T	Y	R	D	R	G	E	K	F	D	V	I	V	X	D	P	P	K	F	V	E	N	K	S	Q	L	X	G	A	C	R	G	Y	K	D	I	N	X	L	A	I	Q	L	L	N	E	G	G	I
Template Known Secondary structure													T	T			G	G	G						S												T	T											S	S		S	S	T	T		S	S	S				T												T
Template Predicted Secondary structure
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	I	V	A	N	A	F	L	P	Y	P	D	V	L	D	E	T	F	G	F	H	E	V	I	A	Q	T	G	R	F	K	V	Y	R
Query Conservation
Alig confidence																												.
Template Conservation																												.
Template Sequence		L	L	T	F	S	C	S	G	L	X	T	S	D	L	F	Q	K	I	I	A	D	A	A	I	D	A	.	G	R	D	V	Q	F	I	E
Template Known Secondary structure									T	T																		.	T
Template Predicted Secondary structure																												.
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360		.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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