Job Description P39406 Confidence 96.89% Date Thu Jan 5 12:00:42 GMT 2012 Rank 313 Aligned Residues 127 % Identity 16% Template c2qy6A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0209 protein yfck; PDBTitle: crystal structure of the n-terminal domain of upf0209 protein yfck2 from escherichia coli o157:h7 Resolution 2.00 Å

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		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220													.	.	.	.	.	.	.				.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.								.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.								.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	V	L	D	V	G	C	G	A	G	V	L	S	V	A	F	A	R	H	S	P	K	.	.	.	.	.	.	.	.	.	.	.	.	I	R	L	T	L	C	D	.	.	.	V	S	A	P	A	V	E	A	S	R	A	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.								.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.								.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	V	A	E	S	G	F	G	T	G	L	N	F	L	T	L	W	Q	A	F	D	Q	F	R	E	A	H	P	Q	A	Q	L	Q	R	L	H	F	I	S	F	E	K	F	P	L	T	R	A	D	L	A	L	A	H	Q	H	W	P	E	L	A	P	W	A	E	Q	L	Q	A	Q	W	P	M	P	L	P	G	C	H	R
Template Known Secondary structure						S			T	T	S																		T	T	S	S											S	S												T	T		G	G	G										T				S		S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
			241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.								260	.	.	.	.	.	.	.	.	.			270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure		.																				.	.	.	.	.	.	.											.	.
Query SS confidence		.																				.	.	.	.	.	.	.											.	.
Query Sequence		.	A	A	N	G	V	E	G	E	V	F	A	S	N	V	F	S	E	V	K	.	.	.	.	.	.	.	G	R	F	D	M	I	I	S	N	P	.	.	P	F	H	D	G	M	Q	T	S	L	D	A	A	Q	T	L	I	R	G	A	V	R	H	L	N	S	G	G	E	L	R	I	V	A	N	A	F	L	P	Y	P
Query Conservation		.																				.	.	.	.	.	.	.											.	.
Alig confidence		.																				.	.	.	.	.	.	.											.	.												.	.	.	.																		.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.																		.	.	.	.	.	.	.	.	.
Template Sequence		L	L	L	D	R	V	T	L	D	L	W	F	G	D	I	N	E	L	I	S	Q	L	D	D	S	L	N	Q	K	V	D	A	W	F	L	D	G	F	A	P	A	K	N	P	D	M	W	T	Q	N	.	.	.	.	L	F	N	A	M	A	R	L	A	R	P	G	G	T	L	A	T	.	.	.	.	.	.	.	.	.
Template Known Secondary structure														S						G	G	G	S		G	G	G	T	T									S	S		T	T	T		G	G	G					.	.	.	.																		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																				.	.	.	.																		.	.	.	.	.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210					.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	L	D	E	T	F	G	F	H	E	V	I	A	Q	T	G	R	F	K	V	Y	R	A	I	M	T	R	Q	A	K
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	F	T	S	A	G	F	V	R	R	G	L	Q	E	A	G	F	T	M	Q	K	R	K	G	F	G	R	K	R
Template Known Secondary structure		.	.	.	S														T									S	T	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions