Job Description P39406 Confidence 99.54% Date Thu Jan 5 12:00:42 GMT 2012 Rank 221 Aligned Residues 120 % Identity 17% Template c2pssC_ PDB info PDB header:transferase Chain: C: PDB Molecule:spermidine synthase; PDBTitle: the structure of plasmodium falciparum spermidine synthase in its apo-2 form Resolution 2.20 Å

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		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.						.	.	.	.	.	.	.	250	.	.	.	.				.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.													.	.	.
Query SS confidence																																																			.	.	.	.	.													.	.	.
Query Sequence		P	H	T	K	G	K	V	L	D	V	G	C	G	A	G	V	L	S	V	A	F	A	R	H	S	P	K	I	R	L	T	L	C	D	V	S	A	P	A	V	E	A	S	R	A	T	L	A	A	.	.	.	.	.	N	G	V	E	G	E	V	F	A	S	N	V	.	.	.	F	S	E	V	K	G	R	F	D	M	I
Query Conservation																																																			.	.	.	.	.													.	.	.
Alig confidence																																																			.	.	.	.	.													.	.	.
Template Conservation
Template Sequence		S	K	E	P	K	N	V	L	V	V	G	G	G	D	G	G	I	I	R	E	L	C	K	Y	K	S	V	E	N	I	D	I	C	E	I	D	E	T	V	I	E	V	S	K	I	Y	F	K	N	I	S	C	G	Y	E	D	K	R	V	N	V	F	I	E	D	A	S	K	F	L	E	N	V	T	N	T	Y	D	V	I
Template Known Secondary structure		S	S	S										T	T									T		T	T									S																	G	G	G	G	S	T	T						S							T	T			S
Template Predicted Secondary structure
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	N	P	P	F	H	D	G	M	Q	T	S	L	D	A	A	Q	T	L	I	R	G	A	V	R	H	L	N	S	G	G	E	L	R	I	V	A	N	A	F	L	P	Y	P	D	V	L	D	E	T	F	G	F	H	E	V	I	A	Q	T
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	N	F	Y	E	K	I	Y	N	A	L	K	P	N	G	Y	C	V	A	Q	C	E	S	L	W	I	H	V	G	T	I	K	N	M	I	G	Y	A	K	K	L	F	K	K
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.																									T	T	T														T	T		S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		194	.	.														.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions