Job Description P39406 Confidence 99.64% Date Thu Jan 5 12:00:42 GMT 2012 Rank 170 Aligned Residues 173 % Identity 16% Template c1uwvA_ PDB info PDB header:transferase Chain: A: PDB Molecule:23s rrna (uracil-5-)-methyltransferase ruma; PDBTitle: crystal structure of ruma, the iron-sulfur cluster2 containing e. coli 23s ribosomal rna 5-methyluridine3 methyltransferase Resolution 1.95 Å

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		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.				.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.
Query SS confidence																																																.	.	.
Query Sequence		Y	F	G	R	L	E	K	Q	P	V	F	D	A	E	K	F	W	G	E	Y	S	V	D	G	L	T	V	K	T	L	P	G	V	F	S	R	D	G	L	D	V	G	S	Q	L	L	.	.	.	L	S	T	L	T	P	H	T	K	G	K	V	L	D	V	G	C	G	A	G	V	L	S	V	A	F	A	R	H	S	P
Query Conservation																																																.	.	.
Alig confidence																																																.	.	.
Template Conservation
Template Sequence		L	Y	L	A	P	D	S	E	I	L	E	T	V	S	G	E	X	P	W	Y	D	S	N	G	L	R	L	T	F	S	P	R	D	F	I	Q	V	N	A	G	V	N	Q	K	X	V	A	R	A	L	E	W	L	D	V	Q	P	E	D	R	V	L	D	L	F	C	G	X	G	N	F	T	L	P	L	A	T	Q	A	A
Template Known Secondary structure						S	S	S	S															T	T							S	S	S				S	B																T			T	T							S		T	T	T	T	T						T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.		.	.	.	.	250	.	.	.	.	.	.	.							.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure																												.													.	.	.	.	.	.
Query SS confidence																												.													.	.	.	.	.	.
Query Sequence		K	I	R	L	T	L	C	D	V	S	A	P	A	V	E	A	S	R	A	T	L	A	A	N	G	V	.	E	G	E	V	F	A	S	N	V	F	S	E	.	.	.	.	.	.	V	K	G	R	F	D	M	I	I	S	N	P	P	F	H	D	G	M	Q	T	S	L	D	A	A	Q	T	L	I	R	G	A	V	R	H
Query Conservation																												.													.	.	.	.	.	.
Alig confidence		.	.																									.													.	.	.	.	.	.														.	.	.	.	.	.	.	.														.
Template Conservation		.	.																																																									.	.	.	.	.	.	.	.														.
Template Sequence		.	.	S	V	V	G	V	E	G	V	P	A	L	V	E	K	G	Q	Q	N	A	R	L	N	G	L	Q	N	V	T	F	Y	H	E	N	L	E	E	D	V	T	K	Q	P	W	A	K	N	G	F	D	K	V	L	L	D	P	A	.	.	.	.	.	.	.	.	R	A	G	A	A	G	V	X	Q	Q	I	I	K	.
Template Known Secondary structure		.	.							S															T	T			S								T	T	S			S	S	S	G	G	G	T	T			S								.	.	.	.	.	.	.	.	T	T												.
Template Predicted Secondary structure		.	.																																																									.	.	.	.	.	.	.	.														.
Template SS confidence
				310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.									.	.	.	.	370	.	.	.	.	.	.	.	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	S	G	G	E	L	R	I	V	A	N	A	F	L	P	Y	P	D	V	L	D	E	T	F	G	F	H	E	V	I	A	Q	T	G	R	F	K	V	Y	R	A	I
Query Conservation
Alig confidence					.																						.	.	.	.	.	.	.	.
Template Conservation					.																						.	.	.	.	.	.	.	.
Template Sequence		L	E	P	.	I	R	I	V	Y	V	S	C	N	P	A	T	L	A	R	D	S	E	A	L	L	.	.	.	.	.	.	.	.	K	A	G	Y	T	I	A	R	L	A
Template Known Secondary structure					.	S							S														.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure					.																						.	.	.	.	.	.	.	.
Template SS confidence
		379	380	.		.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.									.	.	.	.	.	.	.	410	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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